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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT5G59920.1 Thale cress cytosol 84.05 77.18
AT5G59940.1 Thale cress cytosol 63.19 63.29
AT5G59930.1 Thale cress cytosol, nucleus, plasma membrane 59.97 59.6
CDY64703 Canola cytosol 57.36 56.33
CDY30007 Canola cytosol, nucleus, plastid 55.98 54.89
CDX74184 Canola plasma membrane 34.36 54.63
CDX74183 Canola cytosol 28.22 53.49
Bra001113.1-P Field mustard cytosol 36.96 52.28
AT5G22355.1 Thale cress cytosol 52.61 51.66
CDY63290 Canola cytosol 38.96 50.6
CDY40661 Canola cytosol 56.9 48.69
AT3G48400.1 Thale cress cytosol 46.01 48.47
AT3G45840.1 Thale cress mitochondrion, nucleus, peroxisome, vacuole 42.33 46.7
AT4G01925.1 Thale cress cytosol 18.56 43.21
AT4G11540.1 Thale cress cytosol 34.51 42.86
AT4G01910.1 Thale cress cytosol 42.02 42.09
AT3G46810.1 Thale cress cytosol 43.56 41.4
AT4G11550.1 Thale cress cytosol 42.18 41.17
AT4G02190.1 Thale cress cytosol 41.56 41.12
AT4G01930.1 Thale cress cytosol 40.95 40.95
AT5G37620.1 Thale cress cytosol 40.8 40.8
AT1G58037.1 Thale cress cytosol 21.32 40.52
AT2G04680.1 Thale cress cytosol 40.49 40.18
AT2G19660.2 Thale cress nucleus 42.33 40.0
AT4G01920.1 Thale cress cytosol 40.34 39.97
AT5G40320.1 Thale cress nucleus 36.2 39.73
AT3G46800.1 Thale cress cytosol 41.26 39.44
AT4G01760.1 Thale cress cytosol 40.18 39.28
AT1G65180.1 Thale cress nucleus 39.26 39.2
AT4G01740.1 Thale cress cytosol 39.11 39.11
AT5G45730.1 Thale cress nucleus 33.44 38.93
AT4G16015.1 Thale cress cytosol 31.75 38.69
AT3G27510.1 Thale cress cytosol 26.07 38.64
AT4G14980.1 Thale cress cytosol 32.21 38.53
AT3G06990.1 Thale cress nucleus 31.75 38.4
AT3G27473.1 Thale cress cytosol 38.5 37.92
AT2G19650.1 Thale cress cytosol 39.57 37.83
AT2G43220.1 Thale cress peroxisome 31.14 37.73
AT5G54030.1 Thale cress cytosol 24.23 37.71
AT3G27480.1 Thale cress cytosol, nucleus, peroxisome 34.82 37.58
AT3G07000.1 Thale cress cytosol 32.98 37.46
AT3G43890.1 Thale cress cytosol 37.88 37.37
AT5G44770.1 Thale cress cytosol, nucleus, peroxisome 30.98 37.34
AT1G69150.1 Thale cress cytosol 29.6 37.33
AT3G28650.1 Thale cress cytosol 37.88 37.14
AT4G13992.1 Thale cress mitochondrion 36.35 36.92
AT3G45530.1 Thale cress cytosol 39.11 36.85
AT5G54050.1 Thale cress nucleus 32.67 36.72
AT2G04500.1 Thale cress cytosol 27.61 36.36
AT5G42840.1 Thale cress cytosol 37.27 36.21
AT5G54020.2 Thale cress nucleus 32.52 36.05
AT5G29624.1 Thale cress cytosol 26.53 35.45
AT3G27500.1 Thale cress cytosol 37.12 34.97
AT4G11390.2 Thale cress cytosol 29.14 34.8
AT5G54040.1 Thale cress cytosol 31.6 34.56
AT3G27490.1 Thale cress cytosol 35.89 34.31
AT4G02180.1 Thale cress cytosol 41.41 27.3
KRG95394 Soybean nucleus 23.31 26.81
KRH67075 Soybean nucleus 22.85 26.14
Protein Annotations
MapMan:35.2EntrezGene:828015ProteinID:AEE82014.1ArrayExpress:AT4G01350EnsemblPlantsGene:AT4G01350RefSeq:AT4G01350
TAIR:AT4G01350RefSeq:AT4G01350-TAIR-GEnsemblPlants:AT4G01350.1TAIR:AT4G01350.1Unigene:At.34445InterPro:DC1
UniProt:F4JI14GO:GO:0003674GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0009719GO:GO:0009987GO:GO:0010200
GO:GO:0035556GO:GO:0046872InterPro:IPR002219RefSeq:NP_192044.2InterPro:PE/DAG-bdPFAM:PF03107
PFscan:PS50081SMART:SM00109SMART:SM00249SUPFAM:SSF57889UniParc:UPI000173935AInterPro:Znf_PHD
SEG:seg:::::
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4JI14]
Coordinates
chr4:+:560146..562438
Molecular Weight (calculated)
74119.1 Da
IEP (calculated)
6.714
GRAVY (calculated)
-0.185
Length
652 amino acids
Sequence
(BLAST)
001: MATTAVNLPI HEHPLYPSAR CIIGECDGCH VNGYMYNGYF CNEPFCFIWF HKECAEAPAE ISHSSHHQHP LLLTNDSIDG PCDLCGQKLL PPCYSCSTCE
101: FKVDLTCAMK PSPPAIEHPL CHHHSLVFLK KREEKVSCEL CKDSIAGPSY SCLECDVYFH VNCIQLSKEV NHPCHSAHPL KLIPFESLTD DAETTCLLCG
201: KKPAENMLYH CSVCNFTSCL GCTKNPPLLV IEHIKTHKHP LILFPRRIPC ICDICGKKCE FAVYVCPQCD FVTARGCIDL ARVININRHD HRIYLTHHLG
301: TGYSKCGVCH ENVNQYKGAY SCSVCPHYAV HSTCAVRTDV WDGVELEGTT EITEDNSPFK VVGDNLICHF SHEEHPLRFQ KDDVFIHDEH KRCAACIHPL
401: GFGSIYCCET CPFILHEKCA NLPMKKRLVF GTRPYTLMKE TTQLTDCTLC GIFSDGFAYS SRWLDVDVHC GSLNEPLVHD CHIHPLNFDK MEGHFCDGCK
501: KNIDDYMLRC KACDFDLCLY CATLPKKIWH RNDGHPLTLC CEEKEEASDK YWCDICEKEL DPSIWFYTCF DCGVTLHAQC VLGDFSRLVL GQNYWFGEKV
601: KFGAVPNNRN TRPLCIQCQS RCKVSVILKE RNEYNRYICS RSCLLSYLGE KI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.