Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G58037.1 | Thale cress | cytosol | 43.04 | 70.26 |
| AT3G06990.1 | Thale cress | nucleus | 63.04 | 65.49 |
| AT3G07000.1 | Thale cress | cytosol | 64.46 | 62.89 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 50.0 | 51.76 |
| AT2G04500.1 | Thale cress | cytosol | 44.46 | 50.3 |
| AT4G14980.1 | Thale cress | cytosol | 48.39 | 49.72 |
| AT4G01925.1 | Thale cress | cytosol | 24.82 | 49.64 |
| AT5G54030.1 | Thale cress | cytosol | 35.18 | 47.02 |
| AT5G54050.1 | Thale cress | nucleus | 48.04 | 46.38 |
| AT5G54040.1 | Thale cress | cytosol | 48.39 | 45.47 |
| AT5G54020.2 | Thale cress | nucleus | 47.5 | 45.24 |
| AT5G29624.1 | Thale cress | cytosol | 37.68 | 43.24 |
| AT2G43220.1 | Thale cress | peroxisome | 40.89 | 42.57 |
| AT4G16015.1 | Thale cress | cytosol | 38.93 | 40.75 |
| AT3G27510.1 | Thale cress | cytosol | 31.43 | 40.0 |
| AT4G11540.1 | Thale cress | cytosol | 36.79 | 39.24 |
| AT5G40320.1 | Thale cress | nucleus | 41.43 | 39.06 |
| AT4G01930.1 | Thale cress | cytosol | 43.39 | 37.27 |
| AT4G11550.1 | Thale cress | cytosol | 43.75 | 36.68 |
| AT1G65180.1 | Thale cress | nucleus | 42.32 | 36.29 |
| AT4G11390.2 | Thale cress | cytosol | 34.82 | 35.71 |
| AT4G02190.1 | Thale cress | cytosol | 41.96 | 35.66 |
| AT4G01760.1 | Thale cress | cytosol | 42.32 | 35.53 |
| AT4G01910.1 | Thale cress | cytosol | 41.25 | 35.48 |
| AT5G22355.1 | Thale cress | cytosol | 41.96 | 35.39 |
| AT4G01740.1 | Thale cress | cytosol | 40.89 | 35.12 |
| AT4G01920.1 | Thale cress | cytosol | 41.25 | 35.11 |
| AT1G69150.1 | Thale cress | cytosol | 31.96 | 34.62 |
| AT3G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 37.32 | 34.6 |
| AT3G27473.1 | Thale cress | cytosol | 40.89 | 34.59 |
| AT3G27490.1 | Thale cress | cytosol | 41.61 | 34.16 |
| AT3G28650.1 | Thale cress | cytosol | 40.54 | 34.14 |
| AT3G43890.1 | Thale cress | cytosol | 40.0 | 33.89 |
| AT3G46810.1 | Thale cress | cytosol | 41.25 | 33.67 |
| AT4G01350.1 | Thale cress | cytosol | 38.93 | 33.44 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 39.11 | 33.38 |
| AT3G46800.1 | Thale cress | cytosol | 40.54 | 33.28 |
| AT4G13992.1 | Thale cress | mitochondrion | 38.04 | 33.18 |
| AT5G59940.1 | Thale cress | cytosol | 38.39 | 33.03 |
| AT2G19660.2 | Thale cress | nucleus | 40.18 | 32.61 |
| AT3G45530.1 | Thale cress | cytosol | 40.18 | 32.51 |
| AT5G42840.1 | Thale cress | cytosol | 38.93 | 32.49 |
| AT5G59920.1 | Thale cress | cytosol | 40.71 | 32.11 |
| AT2G04680.1 | Thale cress | cytosol | 37.5 | 31.96 |
| AT5G37620.1 | Thale cress | cytosol | 37.14 | 31.9 |
| AT2G19650.1 | Thale cress | cytosol | 38.75 | 31.82 |
| AT3G48400.1 | Thale cress | cytosol | 35.0 | 31.66 |
| AT3G27500.1 | Thale cress | cytosol | 39.11 | 31.65 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 30.89 | 29.27 |
| KRG95394 | Soybean | nucleus | 25.18 | 24.87 |
| KRH67075 | Soybean | nucleus | 24.82 | 24.39 |
| AT4G02180.1 | Thale cress | cytosol | 42.14 | 23.86 |
Protein Annotations
| Gene3D:3.30.60.20 | MapMan:35.2 | EntrezGene:834612 | ProteinID:AED95290.1 | ArrayExpress:AT5G45730 | EnsemblPlantsGene:AT5G45730 |
| RefSeq:AT5G45730 | TAIR:AT5G45730 | RefSeq:AT5G45730-TAIR-G | EnsemblPlants:AT5G45730.1 | TAIR:AT5G45730.1 | InterPro:DC1 |
| UniProt:F4KEM1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | RefSeq:NP_199385.2 | PFAM:PF03107 |
| PO:PO:0000293 | ScanProsite:PS01359 | PANTHER:PTHR32410 | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI0001E93055 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD | SEG:seg | : | : | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4KEM1]
Coordinates
chr5:+:18551809..18553907
Molecular Weight (calculated)
64325.7 Da
IEP (calculated)
6.927
GRAVY (calculated)
-0.442
Length
560 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQQSERVKQ FCNHPLRYAR IKQEGVITGR SNNCDGCGDD SGYGYYCELC NIQAHVACIG WPDIINHPCH SRHPLKKVSP ETIDYTDGKC QFCRSPLVDL
101: MYHCSICNFS VDLRCWLNPA PLTIYEQKSH SHTLTLMARK DAFTCNACGL VGDRNPYVCL ECDFMLHKGC INLPRVININ RHDHKISRTY HLGHGDWECG
201: VCRQKMDWTL GAFFCSRCPN YAVHSKCATR EDVWDGKELE DKPEDEGEED PYKVINEKEI IHFSHEEHNL KLGDDDNAAD YEKMWCDACI RPIDSDPFFK
301: CVECKFFLHK VCASLPRKKR NILHSHLLRL QYGDRHGKPF KCTSCLQYFD GFKYKCNFNS ACIHMNILFD IRCSSISEPF QHELHPHPLF RTSKEHKTCG
401: ACGEDSEYVL SCIVCDFALG MDCATLPRKV KHRCDDHVLS LHHGAGSSNG QLWCDICEGK TDASVWYYGC DECGVTLHIE CVLGDMCYLK PGNKYLGGEL
501: VPNHGMTRPI CIVCEKRCMF PFFLKGIAYS DSTVVYACSR KCAYRGHDRW EEWYSKVHCE
101: MYHCSICNFS VDLRCWLNPA PLTIYEQKSH SHTLTLMARK DAFTCNACGL VGDRNPYVCL ECDFMLHKGC INLPRVININ RHDHKISRTY HLGHGDWECG
201: VCRQKMDWTL GAFFCSRCPN YAVHSKCATR EDVWDGKELE DKPEDEGEED PYKVINEKEI IHFSHEEHNL KLGDDDNAAD YEKMWCDACI RPIDSDPFFK
301: CVECKFFLHK VCASLPRKKR NILHSHLLRL QYGDRHGKPF KCTSCLQYFD GFKYKCNFNS ACIHMNILFD IRCSSISEPF QHELHPHPLF RTSKEHKTCG
401: ACGEDSEYVL SCIVCDFALG MDCATLPRKV KHRCDDHVLS LHHGAGSSNG QLWCDICEGK TDASVWYYGC DECGVTLHIE CVLGDMCYLK PGNKYLGGEL
501: VPNHGMTRPI CIVCEKRCMF PFFLKGIAYS DSTVVYACSR KCAYRGHDRW EEWYSKVHCE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.