Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 2
- peroxisome 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G27490.1 | Thale cress | cytosol | 76.32 | 67.6 |
| AT3G27473.1 | Thale cress | cytosol | 71.03 | 64.8 |
| AT3G27500.1 | Thale cress | cytosol | 72.02 | 62.86 |
| AT3G28650.1 | Thale cress | cytosol | 68.87 | 62.56 |
| AT5G42840.1 | Thale cress | cytosol | 68.71 | 61.85 |
| AT3G45530.1 | Thale cress | cytosol | 69.54 | 60.69 |
| AT3G27510.1 | Thale cress | cytosol | 44.04 | 60.45 |
| AT4G01925.1 | Thale cress | cytosol | 20.36 | 43.93 |
| AT4G11540.1 | Thale cress | cytosol | 37.25 | 42.86 |
| AT1G58037.1 | Thale cress | cytosol | 23.51 | 41.4 |
| AT4G01930.1 | Thale cress | cytosol | 42.22 | 39.11 |
| AT4G11550.1 | Thale cress | cytosol | 43.05 | 38.92 |
| AT5G54030.1 | Thale cress | cytosol | 26.82 | 38.66 |
| AT4G01910.1 | Thale cress | cytosol | 41.23 | 38.25 |
| AT4G01760.1 | Thale cress | cytosol | 42.22 | 38.23 |
| AT4G01740.1 | Thale cress | cytosol | 41.06 | 38.04 |
| AT4G01920.1 | Thale cress | cytosol | 41.39 | 37.99 |
| AT5G40320.1 | Thale cress | nucleus | 37.25 | 37.88 |
| AT2G43220.1 | Thale cress | peroxisome | 33.61 | 37.73 |
| AT5G22355.1 | Thale cress | cytosol | 41.39 | 37.65 |
| AT4G02190.1 | Thale cress | cytosol | 41.06 | 37.63 |
| AT4G16015.1 | Thale cress | cytosol | 33.11 | 37.38 |
| AT5G45730.1 | Thale cress | nucleus | 34.6 | 37.32 |
| AT3G48400.1 | Thale cress | cytosol | 37.91 | 37.0 |
| AT2G04500.1 | Thale cress | cytosol | 30.13 | 36.77 |
| AT3G46810.1 | Thale cress | cytosol | 41.72 | 36.73 |
| AT4G14980.1 | Thale cress | cytosol | 33.11 | 36.7 |
| AT5G44770.1 | Thale cress | cytosol, nucleus, peroxisome | 32.78 | 36.6 |
| AT1G69150.1 | Thale cress | cytosol | 31.29 | 36.56 |
| AT3G46800.1 | Thale cress | cytosol | 41.23 | 36.51 |
| AT2G04680.1 | Thale cress | cytosol | 39.4 | 36.23 |
| AT3G07000.1 | Thale cress | cytosol | 34.11 | 35.89 |
| AT5G29624.1 | Thale cress | cytosol | 28.64 | 35.45 |
| AT3G06990.1 | Thale cress | nucleus | 31.62 | 35.44 |
| AT1G65180.1 | Thale cress | nucleus | 38.08 | 35.22 |
| AT2G19650.1 | Thale cress | cytosol | 39.74 | 35.19 |
| AT2G19660.2 | Thale cress | nucleus | 40.07 | 35.07 |
| AT4G01350.1 | Thale cress | cytosol | 37.58 | 34.82 |
| AT5G37620.1 | Thale cress | cytosol | 37.42 | 34.66 |
| AT3G43890.1 | Thale cress | cytosol | 37.58 | 34.34 |
| AT5G54050.1 | Thale cress | nucleus | 32.78 | 34.14 |
| AT5G59940.1 | Thale cress | cytosol | 36.59 | 33.95 |
| AT5G59930.1 | Thale cress | cytosol, nucleus, plasma membrane | 36.76 | 33.84 |
| AT4G11390.2 | Thale cress | cytosol | 30.46 | 33.7 |
| AT5G54040.1 | Thale cress | cytosol | 32.78 | 33.22 |
| AT5G54020.2 | Thale cress | nucleus | 32.12 | 32.99 |
| AT5G59920.1 | Thale cress | cytosol | 38.24 | 32.54 |
| AT4G13992.1 | Thale cress | mitochondrion | 34.27 | 32.24 |
| AT3G45840.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 30.46 | 31.13 |
| AT4G02180.1 | Thale cress | cytosol | 41.72 | 25.48 |
| KRG95394 | Soybean | nucleus | 23.18 | 24.69 |
| KRH67075 | Soybean | nucleus | 22.52 | 23.86 |
Protein Annotations
| Gene3D:3.30.60.20 | MapMan:35.2 | EntrezGene:822370 | ProteinID:AEE77327.1 | ArrayExpress:AT3G27480 | EnsemblPlantsGene:AT3G27480 |
| RefSeq:AT3G27480 | TAIR:AT3G27480 | RefSeq:AT3G27480-TAIR-G | EnsemblPlants:AT3G27480.1 | TAIR:AT3G27480.1 | Unigene:At.65165 |
| InterPro:DC1 | UniProt:F4IWJ4 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0035556 | InterPro:IPR002219 | RefSeq:NP_189385.1 |
| InterPro:PE/DAG-bd | PFAM:PF03107 | PFscan:PS50081 | SUPFAM:SSF57889 | UniParc:UPI000016357B | : |
Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4IWJ4]
Coordinates
chr3:-:10173220..10175604
Molecular Weight (calculated)
68805.2 Da
IEP (calculated)
6.856
GRAVY (calculated)
-0.297
Length
604 amino acids
Sequence
(BLAST)
(BLAST)
001: MTENVRGHEH LVSVVNQGDG MECDACDQLH VGGYSCSECK FNIHKKCVYV FTAKEIFDHP SHDGHCLKLL TTGAPDHTDP KCHLCGKNTK RLLYHCSDCK
101: LNLDIGCIAD HRSAPFHLNM SWHHHPLVLG LSYFDRCSFC HKIGNEDSKG YRCLRCGLVI HTRCTFIFDS PEITHPAHVR HPLKRLTDGA PNYTDQRCHI
201: CGENTGNLLY HCDICKFNLD MRCAIERPPP VALSNLKVHE HTLTLMPRLI SFVCDACGTK GDRSPYMCVQ CDFMTFHQKC ARLPRVIHVN HHDHRVSFKY
301: PLGPGEWRCG VCWEEIDWSY GAYSCSLCPN YAIHSLCATR KDVWDGIELD GVPEEIEDIE PFKRNDDSTI THCAHQHNLM SLRKDGEENS LCGACVRPIG
401: SYTFYKCSES ECIFILHEMC ANLRKKKRHF LSPEPLHLSV LEQSDDSPTA CSACLQVCSE GFVYDHDTYG TFDLLCSSID VPFIHGSHPH PLLYLKLQHG
501: HFKTCQSCGI DHTKVVIGCL KCNYFLDFRC ATLPLTVSLP RYDDHPLTLC YGEKSSDKYW CDICERETNT ETWFYTGSES GVTLHILCVL GDIRYLHCFR
601: LGRL
101: LNLDIGCIAD HRSAPFHLNM SWHHHPLVLG LSYFDRCSFC HKIGNEDSKG YRCLRCGLVI HTRCTFIFDS PEITHPAHVR HPLKRLTDGA PNYTDQRCHI
201: CGENTGNLLY HCDICKFNLD MRCAIERPPP VALSNLKVHE HTLTLMPRLI SFVCDACGTK GDRSPYMCVQ CDFMTFHQKC ARLPRVIHVN HHDHRVSFKY
301: PLGPGEWRCG VCWEEIDWSY GAYSCSLCPN YAIHSLCATR KDVWDGIELD GVPEEIEDIE PFKRNDDSTI THCAHQHNLM SLRKDGEENS LCGACVRPIG
401: SYTFYKCSES ECIFILHEMC ANLRKKKRHF LSPEPLHLSV LEQSDDSPTA CSACLQVCSE GFVYDHDTYG TFDLLCSSID VPFIHGSHPH PLLYLKLQHG
501: HFKTCQSCGI DHTKVVIGCL KCNYFLDFRC ATLPLTVSLP RYDDHPLTLC YGEKSSDKYW CDICERETNT ETWFYTGSES GVTLHILCVL GDIRYLHCFR
601: LGRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.