CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80461
CDX86843
CDX87176
CDX88013
CDY01754
CDY05402
CDY05452
CDY08148
CDY16845
CDY28576
CDY28577
CDY45763
CDY68276
CDY69515
CDY71004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	CDY01754	AT1G69690.1	21798944
AT5G51100.1	CDY28576	AT1G69690.1	21798944
AT5G51100.1	CDY28577	AT1G69690.1	21798944
AT5G51100.1	CDY68276	AT1G69690.1	21798944
AT5G51100.1	CDY08148	AT3G49580.1	21798944
AT5G51100.1	CDX86843	AT4G10800.1	21798944
AT5G51100.1	CDY71004	AT4G10800.1	21798944
AT5G51100.1	CDX87176	AT5G23310.1	18996978
AT5G51100.1	CDX88013	AT5G23310.1	18996978
AT5G51100.1	CDY16845	AT5G23310.1	18996978
AT5G51100.1	CDY45763	AT5G23310.1	18996978
AT5G51100.1	CDX80461	AT5G24660.1	21798944
AT5G51100.1	CDY05402	AT5G24660.1	21798944
AT5G51100.1	CDY05452	AT5G24660.1	21798944
AT5G51100.1	CDY69515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38848	Canola	plastid	95.33	95.65
AT5G51100.1	Thale cress	plastid	77.0	75.74
CDY03380	Canola	cytosol	44.67	64.42
CDY34342	Canola	cytosol	45.33	63.85
CDX92676	Canola	cytosol	44.67	62.04
CDY05836	Canola	cytosol	44.33	61.57
CDY11055	Canola	cytosol	44.33	61.57
KRH34597	Soybean	cytosol, nucleus	50.0	61.48
Solyc06g048420.1.1	Tomato	cytosol	32.67	61.25
Solyc06g048410.2.1	Tomato	plastid	49.67	59.84
KRG92190	Soybean	cytosol	49.33	59.68
Solyc03g095180.2.1	Tomato	plastid	59.67	59.08
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	59.33	58.75
PGSC0003DMT400070920	Potato	extracellular, plastid	48.67	57.94
VIT_16s0013g00260.t01	Wine grape	plastid	56.67	55.56
KRH70390	Soybean	plastid	57.33	54.78
GSMUA_Achr11P...	Banana	plastid	52.67	52.49
KRH33343	Soybean	plastid	54.0	52.26
CDX87176	Canola	plastid	39.67	45.77
CDY16845	Canola	plastid	39.33	44.87
CDX88013	Canola	plastid	39.33	44.7
CDY45763	Canola	plastid	39.0	44.49
CDY36283	Canola	cytosol	21.67	36.11
CDY08566	Canola	mitochondrion	26.33	34.2
CDY08564	Canola	mitochondrion	26.33	34.2
CDY00976	Canola	mitochondrion	26.33	34.2
Os06t0115400-01	Rice	plastid	41.0	31.46
CDY27222	Canola	cytosol	23.33	30.84
TraesCS4A01G434000.1	Wheat	plastid	40.0	30.69
TraesCS7D01G043000.1	Wheat	plastid	40.0	30.61
TraesCS7A01G048600.1	Wheat	mitochondrion	39.33	30.03
KXG19156	Sorghum	plastid	39.0	29.85
CDX72144	Canola	endoplasmic reticulum	23.33	28.93
CDY70727	Canola	mitochondrion	26.67	28.67
HORVU7Hr1G008390.6	Barley	plastid	39.33	28.64
Zm00001d038235_P001	Maize	cytosol	1.0	20.0

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.9	Gene3D:2.40.500.20	GO:A0A078H5C3	UniProt:A0A078H5C3
EnsemblPlants:CDY32644	ProteinID:CDY32644	ProteinID:CDY32644.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784
GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00052681001	InterPro:IPR036314	InterPro:IPR036324
InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081
PFAM:PF02777	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF8	MetaCyc:PWY-6854
InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0004EBDA0B	SEG:seg	:

Description

BnaC03g16120DBnaC03g16120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5C3]

Coordinates

chrLK032297:+:406283..408227

Molecular Weight (calculated)

34406.2 Da

IEP (calculated)

4.616

GRAVY (calculated)

-0.616

Length

300 amino acids

Sequence
(BLAST)

001: MMMTTTSSFL SSRCSLLTSQ GPNRQMQWKR HEKRQFSRKV AVSGVVRAGF ELKPPPYPLD ALEPHMSRET LDYHWGKHHK TYVENLNKQI LGTDLDGLSL
101: EEVVLLSYNR GNMLPAFNNA AQAWNHEFFW ESIQPGGGGK PSGDLLRLIE RDFGSFDDFV ERFKAAASSN FGSGWTWLAY KANRLDVANA VNPLPKEEDK
201: KLVIVKTPNA VNPLVWDYSP LLTIDTWEHA YYLDFENRRV EYINTFMEKL VSWETVSTRL ESAMARAAQR EQEGTDTEDE EIPDDEEPEV YLDDASEEVD

Best Arabidopsis Sequence Match ( AT5G51100.1 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID
301: VSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.