Factsheet for GSMUA_Achr11P23560_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	GSMUA_Achr10P...	AT5G23310.1	18996978
AT5G51100.1	GSMUA_Achr10P...	AT5G23310.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34597	Soybean	cytosol, nucleus	47.51	58.61
Bra029190.1-P	Field mustard	mitochondrion	51.49	57.41
CDX92676	Canola	cytosol	40.86	56.94
CDY11055	Canola	cytosol	40.86	56.94
CDY03380	Canola	cytosol	39.2	56.73
AT4G25100.2	Thale cress	plastid	39.87	56.6
KRG92190	Soybean	cytosol	46.51	56.45
Bra013863.1-P	Field mustard	cytosol	39.53	56.13
CDY34342	Canola	cytosol	39.53	55.87
VIT_16s0013g00260.t01	Wine grape	plastid	55.81	54.9
CDY38848	Canola	plastid	53.16	53.51
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	53.82	53.47
Solyc03g095180.2.1	Tomato	plastid	53.82	53.47
Solyc06g048410.2.1	Tomato	plastid	44.19	53.41
CDY32644	Canola	plastid	52.49	52.67
KRH70390	Soybean	plastid	54.82	52.55
KRH33343	Soybean	plastid	53.49	51.94
AT5G51100.1	Thale cress	plastid	52.49	51.8
Solyc06g048420.1.1	Tomato	cytosol	27.24	51.25
PGSC0003DMT400070920	Potato	extracellular, plastid	42.86	51.19
CDY05836	Canola	cytosol	30.9	43.06
GSMUA_Achr10P...	Banana	vacuole	30.56	40.89
GSMUA_Achr10P...	Banana	mitochondrion	30.9	39.08
Bra035724.1-P	Field mustard	cytosol	27.91	38.01
TraesCS7D01G043000.1	Wheat	plastid	45.85	35.2
Zm00001d045538_P001	Maize	plastid	44.52	34.72
TraesCS4A01G434000.1	Wheat	plastid	44.85	34.53
TraesCS7A01G048600.1	Wheat	mitochondrion	44.85	34.35
Os06t0115400-01	Rice	plastid	44.19	34.02
KXG19156	Sorghum	plastid	43.19	33.16
HORVU7Hr1G008390.6	Barley	plastid	44.52	32.52
GSMUA_Achr3P09840_001	Banana	mitochondrion	23.59	29.46
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	23.26	28.57
GSMUA_Achr8P21350_001	Banana	mitochondrion	22.26	28.15
GSMUA_Achr3P18000_001	Banana	mitochondrion	21.93	27.16
CDY70727	Canola	mitochondrion	16.94	18.28

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.9	Gene3D:2.40.500.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr11G23560_001	EnsemblPlants:GSMUA_Achr11P23560_001
EnsemblPlants:GSMUA_Achr11T23560_001	InterPro:IPR036314	InterPro:IPR036324	UniProt:M0RUT6	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS
InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PRINTS:PR01703
ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF3	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719
UniParc:UPI00029699FB	SEG:seg	:	:	:	:

Description

Superoxide dismutase [Fe], chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G23560_001]

Coordinates

chr11:+:23428858..23433050

Molecular Weight (calculated)

34181.3 Da

IEP (calculated)

5.965

GRAVY (calculated)

-0.473

Length

301 amino acids

Sequence
(BLAST)

001: MQHHTLSCCG GVRPSLPPPP LSFRWSKIKR EGGRRLPRCA RIAAQLELKP PPYSLSSLEP HMSRETLEYH WGRHHRAHVA SLNNLIAGTD LDGMGLDEIV
101: VVSYNKGNPL PLFVHAAQVW NHDFFWQSIK PGGGGRPSGR LMELIERDFG SFDRMLEEFK RAALTQFGSG WAWLVYKANR LDVGNAVNPC PSEKGNKLVV
201: LKSPNAVNPI VWDYSPLLAI DVWEHAYYLD YENRRADYVS IFLEKLVSWE VVSDRLDVAI ERAAERARED ETRRQEDDAA VTHSEAVEMY LDSDTDDSEA
301: E

Best Arabidopsis Sequence Match ( AT5G51100.1 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID
301: VSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.