Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular
Predictor Summary:
Predictor Summary:
- plastid 11
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
28248230
|
msms PMID:
28248230
doi
National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g048410.2.1 | Tomato | plastid | 92.86 | 93.98 |
| Solyc06g048420.1.1 | Tomato | cytosol | 53.57 | 84.38 |
| Bra013863.1-P | Field mustard | cytosol | 60.32 | 71.7 |
| CDY34342 | Canola | cytosol | 60.32 | 71.36 |
| AT4G25100.2 | Thale cress | plastid | 59.92 | 71.23 |
| CDY03380 | Canola | cytosol | 58.73 | 71.15 |
| CDY11055 | Canola | cytosol | 60.32 | 70.37 |
| CDX92676 | Canola | cytosol | 59.13 | 68.98 |
| KRH34597 | Soybean | cytosol, nucleus | 61.51 | 63.52 |
| PGSC0003DMT400013447 | Potato | cytosol, extracellular, plastid | 75.0 | 62.38 |
| KRG92190 | Soybean | cytosol | 59.92 | 60.89 |
| VIT_16s0013g00260.t01 | Wine grape | plastid | 69.44 | 57.19 |
| Bra029190.1-P | Field mustard | mitochondrion | 56.75 | 52.96 |
| KRH33343 | Soybean | plastid | 61.9 | 50.32 |
| AT5G51100.1 | Thale cress | plastid | 60.71 | 50.16 |
| KRH70390 | Soybean | plastid | 60.71 | 48.73 |
| CDY32644 | Canola | plastid | 57.94 | 48.67 |
| CDY38848 | Canola | plastid | 57.54 | 48.49 |
| PGSC0003DMT400046236 | Potato | plastid | 44.05 | 43.02 |
| GSMUA_Achr11P... | Banana | plastid | 51.19 | 42.86 |
| PGSC0003DMT400042937 | Potato | mitochondrion | 32.94 | 36.4 |
| CDY05836 | Canola | cytosol | 30.16 | 35.19 |
| Bra035724.1-P | Field mustard | cytosol | 26.19 | 29.86 |
| TraesCS7D01G043000.1 | Wheat | plastid | 46.43 | 29.85 |
| Zm00001d045538_P001 | Maize | plastid | 45.63 | 29.79 |
| Os06t0115400-01 | Rice | plastid | 46.03 | 29.67 |
| TraesCS4A01G434000.1 | Wheat | plastid | 46.03 | 29.67 |
| TraesCS7A01G048600.1 | Wheat | mitochondrion | 45.63 | 29.26 |
| HORVU7Hr1G008390.6 | Barley | plastid | 47.62 | 29.13 |
| KXG19156 | Sorghum | plastid | 44.84 | 28.83 |
| CDY70727 | Canola | mitochondrion | 22.62 | 20.43 |
Protein Annotations
| Gene3D:1.10.287.990 | MapMan:10.2.2.1 | EntrezGene:102577566 | EntrezGene:102588174 | MapMan:15.6.1.2.2.4 | MapMan:15.6.1.2.2.9 |
| Gene3D:2.40.500.20 | ProteinID:AAO16563 | ProteinID:AAO16563.1 | EMBL:AY172650 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004784 | GO:GO:0005488 | GO:GO:0006801 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016491 | GO:GO:0019430 | GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR036314 |
| InterPro:IPR036324 | UniProt:M1CMY9 | InterPro:Mn/Fe_SOD | InterPro:Mn/Fe_SOD_BS | InterPro:Mn/Fe_SOD_C | InterPro:Mn/Fe_SOD_N |
| InterPro:Mn/Fe_SOD_N_sf | PFAM:PF00081 | PFAM:PF02777 | EnsemblPlantsGene:PGSC0003DMG400027577 | PGSC:PGSC0003DMG400027577 | EnsemblPlants:PGSC0003DMT400070920 |
| PIRSF:PIRSF000349 | PRINTS:PR01703 | ScanProsite:PS00088 | PANTHER:PTHR42769 | PANTHER:PTHR42769:SF8 | InterPro:SOD_C_sf |
| SUPFAM:SSF46609 | SUPFAM:SSF54719 | UniParc:UPI000295C3C9 | RefSeq:XP_006357312.1 | SEG:seg | : |
Description
Superoxide dismutase [Source:PGSC_GENE;Acc:PGSC0003DMG400027577]
Coordinates
chr6:-:35304211..35306389
Molecular Weight (calculated)
28324.4 Da
IEP (calculated)
7.182
GRAVY (calculated)
-0.480
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATASANSL TSAFLPPQGL NGSSKSLQWR TQKLQKQFGR KSDSATITAK FDLNSPPYPM DALEPHMSSR TFEFHWGKHH RAYVDNLNKQ IEGTELDGKT
101: LEDIILVTYN KGAPLPAFNN AAQAWNHQFF WESMKPNGGG EPSGELLELI NRDFGSYDTF VKEFKAAAAT QFGSGWAWLA YKPEDKKLAL VKTPNAENPL
201: VLGYTPLLTI DVWEHAYYLD FQNRRPDYIS IFMEKLVSWE AVNSRLKAAT AP
101: LEDIILVTYN KGAPLPAFNN AAQAWNHQFF WESMKPNGGG EPSGELLELI NRDFGSYDTF VKEFKAAAAT QFGSGWAWLA YKPEDKKLAL VKTPNAENPL
201: VLGYTPLLTI DVWEHAYYLD FQNRRPDYIS IFMEKLVSWE AVNSRLKAAT AP
001: MAASSAVTAN YVLKPPPFAL DALEPHMSKQ TLEFHWGKHH RAYVDNLKKQ VLGTELEGKP LEHIIHSTYN NGDLLPAFNN AAQAWNHEFF WESMKPGGGG
101: KPSGELLALL ERDFTSYEKF YEEFNAAAAT QFGAGWAWLA YSNEKLKVVK TPNAVNPLVL GSFPLLTIDV WEHAYYLDFQ NRRPDYIKTF MTNLVSWEAV
201: SARLEAAKAA SA
101: KPSGELLALL ERDFTSYEKF YEEFNAAAAT QFGAGWAWLA YSNEKLKVVK TPNAVNPLVL GSFPLLTIDV WEHAYYLDFQ NRRPDYIKTF MTNLVSWEAV
201: SARLEAAKAA SA
Arabidopsis Description
FSD1Superoxide dismutase [Fe] 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P21276]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.