Factsheet for PGSC0003DMT400013447

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400008728
PGSC0003DMT400046236
PGSC0003DMT400069515
PGSC0003DMT400081827

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	PGSC0003DMT400008728	AT1G69690.1	21798944
AT5G51100.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT5G51100.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT5G51100.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT5G51100.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT5G51100.1	PGSC0003DMT400081827	AT4G10800.1	21798944
AT5G51100.1	PGSC0003DMT400046236	AT5G23310.1	18996978
AT5G51100.1	PGSC0003DMT400001474	AT5G24660.1	21798944
AT5G51100.1	PGSC0003DMT400001475	AT5G24660.1	21798944
AT5G51100.1	PGSC0003DMT400001476	AT5G24660.1	21798944
AT5G51100.1	PGSC0003DMT400069515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g095180.2.1	Tomato	plastid	95.71	95.71
PGSC0003DMT400070920	Potato	extracellular, plastid	62.38	75.0
CDY03380	Canola	cytosol	49.84	72.6
Bra013863.1-P	Field mustard	cytosol	50.49	72.17
CDY34342	Canola	cytosol	50.49	71.83
AT4G25100.2	Thale cress	plastid	49.51	70.75
KRH34597	Soybean	cytosol, nucleus	56.11	69.67
VIT_16s0013g00260.t01	Wine grape	plastid	70.3	69.61
CDY11055	Canola	cytosol	49.51	69.44
CDX92676	Canola	cytosol	48.51	68.06
KRG92190	Soybean	cytosol	54.13	66.13
Bra029190.1-P	Field mustard	mitochondrion	58.09	65.19
KRH70390	Soybean	plastid	63.04	60.83
CDY38848	Canola	plastid	59.08	59.87
CDY32644	Canola	plastid	58.75	59.33
KRH33343	Soybean	plastid	59.74	58.39
AT5G51100.1	Thale cress	plastid	58.75	58.36
GSMUA_Achr11P...	Banana	plastid	53.47	53.82
CDY05836	Canola	cytosol	34.98	49.07
PGSC0003DMT400046236	Potato	plastid	37.62	44.19
Bra035724.1-P	Field mustard	cytosol	32.01	43.89
PGSC0003DMT400042937	Potato	mitochondrion	27.72	36.84
Zm00001d045538_P001	Maize	plastid	44.22	34.72
TraesCS4A01G434000.1	Wheat	plastid	44.22	34.27
TraesCS7D01G043000.1	Wheat	plastid	44.22	34.18
Os06t0115400-01	Rice	plastid	43.56	33.76
KXG19156	Sorghum	plastid	43.23	33.42
TraesCS7A01G048600.1	Wheat	mitochondrion	42.9	33.08
HORVU7Hr1G008390.6	Barley	plastid	43.56	32.04
CDY70727	Canola	mitochondrion	20.46	22.22

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.9	Gene3D:2.40.500.20	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314
InterPro:IPR036324	UniProt:M1A2V6	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N
InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	EnsemblPlantsGene:PGSC0003DMG400005247	PGSC:PGSC0003DMG400005247	EnsemblPlants:PGSC0003DMT400013447
PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF8	InterPro:SOD_C_sf	SUPFAM:SSF46609
SUPFAM:SSF54719	UniParc:UPI0002955AA8	SEG:seg	:	:	:

Description

Superoxide dismutase [Source:PGSC_GENE;Acc:PGSC0003DMG400005247]

Coordinates

chr3:-:36657156..36660903

Molecular Weight (calculated)

34621.7 Da

IEP (calculated)

5.637

GRAVY (calculated)

-0.557

Length

303 amino acids

Sequence
(BLAST)

001: MAAAIASVTL FSPFLPSPGF HESCLSLNWR IHKKQLARKA GPVKVTAKFE LNPPPYPMNA LEPHMSRTTF EYHWGKHHRA YVDNLNKQIV GTELDELTLE
101: DIILITYNQG NLLPPFNNAA QAWNHQFFWE SMKPGGGGEP SGELLKLINR DFGSFEAFVK KFKAAAATQF GSGWAWLAYK ANRLDVGNAS NPHPSDEDKK
201: LVIVKTPNAV NPLVWDYSPL LTIDVWEHAY YLDFRNRRPD YISIFMEKLV SWEAVSSRLE AAQAQAAERE KEEERKKREE EEEYQAGNEI REMYVETTDS
301: EAD

Best Arabidopsis Sequence Match ( AT5G51100.1 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID
301: VSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.