CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34342	Canola	cytosol	99.52	97.18
Bra013863.1-P	Field mustard	cytosol	99.04	97.17
AT4G25100.2	Thale cress	plastid	92.31	90.57
CDY11055	Canola	cytosol	92.79	89.35
CDX92676	Canola	cytosol	91.35	87.96
Solyc06g048420.1.1	Tomato	cytosol	48.56	63.12
KRH34597	Soybean	cytosol, nucleus	73.08	62.3
KRG92190	Soybean	cytosol	74.04	62.1
Solyc06g048410.2.1	Tomato	plastid	72.6	60.64
PGSC0003DMT400070920	Potato	extracellular, plastid	71.15	58.73
Solyc03g095180.2.1	Tomato	plastid	72.6	49.84
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	72.6	49.84
VIT_16s0013g00260.t01	Wine grape	plastid	70.19	47.71
KRH70390	Soybean	plastid	70.67	46.82
KRH33343	Soybean	plastid	68.27	45.81
CDY38848	Canola	plastid	64.9	45.15
CDY32644	Canola	plastid	64.42	44.67
CDX87176	Canola	plastid	55.77	44.62
CDY45763	Canola	plastid	55.77	44.11
CDY16845	Canola	plastid	55.77	44.11
CDX88013	Canola	plastid	55.77	43.94
GSMUA_Achr11P...	Banana	plastid	56.73	39.2
CDY36283	Canola	cytosol	27.88	32.22
CDY05836	Canola	cytosol	32.69	31.48
CDY08566	Canola	mitochondrion	31.73	28.57
CDY00976	Canola	mitochondrion	31.73	28.57
CDY08564	Canola	mitochondrion	31.73	28.57
CDY27222	Canola	cytosol	29.81	27.31
KXG19156	Sorghum	plastid	50.96	27.04
Os06t0115400-01	Rice	plastid	50.0	26.6
TraesCS7D01G043000.1	Wheat	plastid	49.52	26.28
TraesCS4A01G434000.1	Wheat	plastid	48.56	25.83
TraesCS7A01G048600.1	Wheat	mitochondrion	48.56	25.7
CDX72144	Canola	endoplasmic reticulum	29.33	25.21
HORVU7Hr1G008390.6	Barley	plastid	49.04	24.76
CDY70727	Canola	mitochondrion	24.04	17.92

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	Gene3D:2.40.500.20	GO:A0A078EN13	EnsemblPlants:CDY03380	ProteinID:CDY03380
ProteinID:CDY03380.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00116014001	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C
InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703
ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF8	MetaCyc:PWY-6854	InterPro:SOD_C_sf	SUPFAM:SSF46609
SUPFAM:SSF54719	UniParc:UPI0004EF0D2C	SEG:seg	:	:	:

Description

BnaC01g17020D

Coordinates

chrLK031943:+:74523..76768

Molecular Weight (calculated)

23401.6 Da

IEP (calculated)

6.635

GRAVY (calculated)

-0.425

Length

208 amino acids

Sequence
(BLAST)

001: MAASAAVTAN YVLKPPPYPL DALEPHMSKQ TLEFHWGKHH RAYVDNLKKQ VLGSELEGKP LEHIIQNTYN NGDLLPPFNN AAQAWNHEFF WGSMKPGGGG
101: KPSGELLALL ERDFTSYEKF YDEFNAAAAT QFGAGWAWLA YADNKLKVVK TPNAVNPLPL LTIDVWEHAY YLDFQQNRRP DYIKTFMNNL VSWEAVSSRL
201: EAAKAASS

Best Arabidopsis Sequence Match ( AT4G25100.2 )
(BLAST)

001: MAASSAVTAN YVLKPPPFAL DALEPHMSKQ TLEFHWGKHH RAYVDNLKKQ VLGTELEGKP LEHIIHSTYN NGDLLPAFNN AAQAWNHEFF WESMKPGGGG
101: KPSGELLALL ERDFTSYEKF YEEFNAAAAT QFGAGWAWLA YSNEKLKVVK TPNAVNPLVL GSFPLLTIDV WEHAYYLDFQ NRRPDYIKTF MTNLVSWEAV
201: SARLEAAKAA SA

Arabidopsis Description

FSD1Superoxide dismutase [Fe] 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P21276]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.