CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra034154.1-P	Field mustard	mitochondrion	98.33	76.62
CDY08566	Canola	mitochondrion	95.56	74.46
CDY08564	Canola	mitochondrion	95.56	74.46
AT3G10920.1	Thale cress	mitochondrion	94.44	73.59
CDY00976	Canola	mitochondrion	92.78	72.29
PGSC0003DMT400042937	Potato	mitochondrion	81.67	64.47
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	81.11	64.04
KRH64185	Soybean	mitochondrion	84.44	63.33
KRH53764	Soybean	mitochondrion	83.89	62.66
Zm00001d037859_P002	Maize	mitochondrion	80.0	61.28
TraesCS2A01G537100.1	Wheat	mitochondrion	78.33	61.04
EES17972	Sorghum	mitochondrion	78.33	60.52
TraesCS2D01G538300.1	Wheat	mitochondrion	77.22	60.17
Os05t0323900-01	Rice	mitochondrion	77.22	60.17
TraesCS2B01G567600.1	Wheat	mitochondrion	74.44	59.56
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	80.56	59.18
GSMUA_Achr3P09840_001	Banana	mitochondrion	78.89	58.92
GSMUA_Achr8P21350_001	Banana	mitochondrion	77.78	58.82
Zm00001d009990_P001	Maize	mitochondrion	78.89	58.44
CDY27222	Canola	cytosol	72.22	57.27
GSMUA_Achr3P18000_001	Banana	mitochondrion	76.11	56.38
CDX72144	Canola	endoplasmic reticulum	74.44	55.37
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	77.22	54.94
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	81.11	51.59
CDY03380	Canola	cytosol	32.22	27.88
CDY34342	Canola	cytosol	32.78	27.7
CDX92676	Canola	cytosol	32.22	26.85
CDY11055	Canola	cytosol	32.22	26.85
CDY38848	Canola	plastid	37.22	22.41
CDY32644	Canola	plastid	36.11	21.67
CDX87176	Canola	plastid	31.11	21.54
CDY45763	Canola	plastid	31.11	21.29
CDY16845	Canola	plastid	31.11	21.29
CDX88013	Canola	plastid	31.11	21.21
CDY05836	Canola	cytosol	22.78	18.98
CDY70727	Canola	mitochondrion	9.44	6.09

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	GO:A0A078HHJ9	UniProt:A0A078HHJ9	EnsemblPlants:CDY36283
ProteinID:CDY36283	ProteinID:CDY36283.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00060251001	InterPro:IPR036314	InterPro:IPR036324
InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081
PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6
MetaCyc:PWY-6854	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0004EF2686	SEG:seg

Description

BnaA01g31350DSuperoxide dismutase [Source:UniProtKB/TrEMBL;Acc:A0A078HHJ9]

Coordinates

chrLK032372:+:86025..87513

Molecular Weight (calculated)

19866.7 Da

IEP (calculated)

8.877

GRAVY (calculated)

-0.381

Length

180 amino acids

Sequence
(BLAST)

001: MQIHHQKHHQ AYVTNYNNAL EQLDQAVSKG DASAVVKLQS AIKFNGGGHV NHSIFWKNLA PVKEGGGEPP KGALGGAIDT HFGSLEGLVK KMSAEGAALQ
101: GSGWVWLGLD KELKKLVVDT TANQDPLVTK GGSLVPLVGI DVWEHAYYLQ YKNVRPEYLK NVWKVINWKY ASEVYEKECK

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.