Factsheet for GSMUA_Achr3P18000_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P09840_001	Banana	mitochondrion	79.84	80.5
GSMUA_Achr8P21350_001	Banana	mitochondrion	78.19	79.83
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	79.84	79.18
CDY36283	Canola	cytosol	56.38	76.11
Os05t0323900-01	Rice	mitochondrion	69.96	73.59
EES17972	Sorghum	mitochondrion	70.37	73.39
Zm00001d037859_P002	Maize	mitochondrion	69.96	72.34
TraesCS2B01G567600.1	Wheat	mitochondrion	65.84	71.11
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	66.67	71.05
TraesCS2A01G537100.1	Wheat	mitochondrion	67.49	71.0
Zm00001d009990_P001	Maize	mitochondrion	70.78	70.78
TraesCS2D01G538300.1	Wheat	mitochondrion	66.67	70.13
CDY00976	Canola	mitochondrion	66.67	70.13
Bra034154.1-P	Field mustard	mitochondrion	65.84	69.26
KRH64185	Soybean	mitochondrion	68.31	69.17
PGSC0003DMT400042937	Potato	mitochondrion	64.61	68.86
KRH53764	Soybean	mitochondrion	67.9	68.46
AT3G10920.1	Thale cress	mitochondrion	65.02	68.4
CDY08566	Canola	mitochondrion	65.02	68.4
Bra029879.1-P	Field mustard	mitochondrion	65.02	68.4
CDY08564	Canola	mitochondrion	65.02	68.4
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	66.26	63.64
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	64.61	55.48
GSMUA_Achr10P...	Banana	vacuole	24.69	26.67
GSMUA_Achr10P...	Banana	mitochondrion	24.69	25.21
GSMUA_Achr11P...	Banana	plastid	27.16	21.93

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784
GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G18000_001	EnsemblPlants:GSMUA_Achr3P18000_001
EnsemblPlants:GSMUA_Achr3T18000_001	InterPro:IPR036314	InterPro:IPR036324	UniProt:M0SFL6	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS
InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349
PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	InterPro:SOD_C_sf	SUPFAM:SSF46609
SUPFAM:SSF54719	UniParc:UPI0002968350	:	:	:	:

Description

Superoxide dismutase [Mn] 3.1, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr3G18000_001]

Coordinates

chr3:-:19433037..19436208

Molecular Weight (calculated)

26579.8 Da

IEP (calculated)

7.343

GRAVY (calculated)

-0.207

Length

243 amino acids

Sequence
(BLAST)

001: MALRALFTKT APTLASGLGP FASAGGSGTR WQGLCHARGL KVAALPDLEY DYGALEPAIS GEIMRLHHQK HHKAYVSNYN DALEKLDAAM AKGDVPAVVR
101: LQSAIKFNGG GHINHTIFWK NLKPVNEGGG EPPHATLGWA IDTDFGSLEA LVQKMNAEGA ALQGSGWVWL ALDKERKKLL VEATANQDPL VTKGANLVPL
201: LGIDVWEHAY YLQYKNVKPE YLKNIWSVMN WKYASEVYDS EIA

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.