Factsheet for Zm00001d009990_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17972	Sorghum	mitochondrion	93.42	97.42
Zm00001d038235_P001	Maize	cytosol	5.76	93.33
Zm00001d037859_P002	Maize	mitochondrion	89.71	92.77
Os05t0323900-01	Rice	mitochondrion	83.54	87.88
TraesCS2A01G537100.1	Wheat	mitochondrion	81.48	85.71
TraesCS2D01G538300.1	Wheat	mitochondrion	80.25	84.42
TraesCS2B01G567600.1	Wheat	mitochondrion	77.37	83.56
CDY36283	Canola	cytosol	58.44	78.89
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	77.78	74.7
GSMUA_Achr3P09840_001	Banana	mitochondrion	73.25	73.86
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	69.14	73.68
PGSC0003DMT400042937	Potato	mitochondrion	68.72	73.25
GSMUA_Achr8P21350_001	Banana	mitochondrion	71.6	73.11
AT3G10920.1	Thale cress	mitochondrion	68.72	72.29
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	72.84	72.24
KRH64185	Soybean	mitochondrion	71.19	72.08
Bra034154.1-P	Field mustard	mitochondrion	67.9	71.43
Bra029879.1-P	Field mustard	mitochondrion	67.49	71.0
GSMUA_Achr3P18000_001	Banana	mitochondrion	70.78	70.78
CDY08566	Canola	mitochondrion	67.08	70.56
CDY08564	Canola	mitochondrion	67.08	70.56
CDY00976	Canola	mitochondrion	66.67	70.13
KRH53764	Soybean	mitochondrion	69.55	70.12
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	64.61	55.48
Zm00001d045384_P003	Maize	mitochondrion	23.05	27.86
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	18.11	23.66
Zm00001d036135_P003	Maize	mitochondrion, plastid	24.69	21.13
Zm00001d014632_P001	Maize	mitochondrion	12.35	19.48
Zm00001d045538_P001	Maize	plastid	27.98	17.62

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	EntrezGene:100193398	Gene3D:2.40.500.20	UniProt:A0A1D6FNG1	ProteinID:AQK93196.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C
InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703
ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719
UniParc:UPI0008437DB5	EnsemblPlantsGene:Zm00001d009990	EnsemblPlants:Zm00001d009990_P001	EnsemblPlants:Zm00001d009990_T001	SEG:seg	:

Description

Superoxide dismutase

Coordinates

chr8:+:93603801..93617027

Molecular Weight (calculated)

26436.5 Da

IEP (calculated)

7.317

GRAVY (calculated)

-0.142

Length

243 amino acids

Sequence
(BLAST)

001: MALRTLASKN ALSFALGGAA RPSAASARGV TTVALPDLSY DFGALEPAIS GEIMRLHHQK HHATYVANYN KALEQLDAAV AKGDASAVVQ LQGAIKFNGG
101: GHVNHSIFWK NLKPISEGGG EPPHGKLGWA IDEDFGSFEA LVKRMNAEGA ALQGSGWVWL ALDKEAKKLS VETTANQDPL VTKGASLVPL LGIDVWEHAY
201: YLQWSPPLLS WLQYKNVRPD YLNNIWKVMN WKYAGEVYEN VLA

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.