Factsheet for Zm00001d025106_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012290_P001
Zm00001d014632_P001
Zm00001d025106_P003
Zm00001d036135_P003
Zm00001d038235_P001
Zm00001d042764_P001
Zm00001d045384_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	Zm00001d012290_P001	AT3G54290.1	21798944
AT5G23310.1	Zm00001d042764_P001	AT3G54290.1	21798944
AT5G23310.1	Zm00001d014632_P001	AT5G23310.1	18996978
AT5G23310.1	Zm00001d025106_P003	AT5G23310.1	18996978
AT5G23310.1	Zm00001d036135_P003	AT5G23310.1	18996978
AT5G23310.1	Zm00001d045384_P003	AT5G23310.1	18996978
AT5G23310.1	Zm00001d038235_P001	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014632_P001	Maize	mitochondrion	65.59	79.22
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	73.66	52.69
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	72.58	51.92
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	72.58	51.72
Zm00001d036135_P003	Maize	mitochondrion, plastid	77.96	51.06
Os06t0143000-01	Rice	plastid	69.89	50.98
GSMUA_Achr10P...	Banana	vacuole	61.29	50.67
Zm00001d045384_P003	Maize	mitochondrion	54.3	50.25
GSMUA_Achr10P...	Banana	mitochondrion	60.22	47.06
CDX87176	Canola	plastid	57.53	41.15
CDY45763	Canola	plastid	58.06	41.06
AT5G23310.1	Thale cress	plastid	58.06	41.06
CDX88013	Canola	plastid	57.53	40.53
Bra009670.1-P	Field mustard	plastid	56.99	40.3
CDY16845	Canola	plastid	56.99	40.3
Bra026503.1-P	Field mustard	plastid	56.99	40.3
HORVU7Hr1G020590.12	Barley	cytosol, plastid	70.97	38.94
Solyc02g021140.2.1	Tomato	nucleus	51.61	38.1
PGSC0003DMT400046236	Potato	plastid	51.61	37.21
VIT_10s0042g00100.t01	Wine grape	mitochondrion	56.99	33.02
KRG89844	Soybean	nucleus	53.76	32.79
Zm00001d037859_P002	Maize	mitochondrion	23.12	18.3
Zm00001d009990_P001	Maize	mitochondrion	23.66	18.11
Zm00001d045538_P001	Maize	plastid	34.95	16.84
Zm00001d038235_P001	Maize	cytosol	0.54	6.67

Protein Annotations

EntrezGene:100193589	Gene3D:2.40.500.20	MapMan:35.1	UniProt:A0A1D6J4T2	ProteinID:AQK42971.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081
PFAM:PF02777	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719
UniParc:UPI000843E06B	EnsemblPlantsGene:Zm00001d025106	EnsemblPlants:Zm00001d025106_P003	EnsemblPlants:Zm00001d025106_T003	SEG:seg	:

Description

Superoxide dismutase [Fe] 3 chloroplastic

Coordinates

chr10:-:104541550..104545518

Molecular Weight (calculated)

21505.5 Da

IEP (calculated)

7.252

GRAVY (calculated)

-0.538

Length

186 amino acids

Sequence
(BLAST)

001: MGYAEIAIRP SGSGKKIQRQ GGLSRRFSNV SYYGLTTPPY KLDALEPYMS KRTVELHWGK HHQDYMDGLN NQLATSPLYG YTLEDLIKEA YNNDNPLPEY
101: NNTAQDGWVW LVLKRNERKL LVVHTRNAIS PLAFGDIHAY YLDYKDDKLT YVTNFMDHLV SWHTVTLRMM RAESFVNLGE PNILEA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.