Factsheet for Solyc02g021140.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073850.1.1
Solyc01g073860.2.1
Solyc02g021140.2.1
Solyc03g095180.2.1
Solyc06g048410.2.1
Solyc06g048420.1.1
Solyc11g006830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	Solyc11g006830.1.1	AT3G54290.1	21798944
AT5G23310.1	Solyc02g021140.2.1	AT5G23310.1	18996978
AT5G23310.1	Solyc01g073850.1.1	AT5G40590.1	21798944
AT5G23310.1	Solyc01g073860.2.1	AT5G40590.1	21798944
AT5G23310.1	Solyc03g095180.2.1	AT5G51100.1	18996978
AT5G23310.1	Solyc06g048410.2.1	AT5G51100.1	18996978
AT5G23310.1	Solyc06g048420.1.1	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046236	Potato	plastid	85.32	83.33
GSMUA_Achr10P...	Banana	vacuole	60.32	67.56
GSMUA_Achr10P...	Banana	mitochondrion	61.11	64.71
CDY16845	Canola	plastid	67.06	64.26
CDX87176	Canola	plastid	66.27	64.23
Bra026503.1-P	Field mustard	plastid	66.67	63.88
CDX88013	Canola	plastid	66.67	63.64
Bra009670.1-P	Field mustard	plastid	66.27	63.5
AT5G23310.1	Thale cress	plastid	66.27	63.5
CDY45763	Canola	plastid	65.87	63.12
Os06t0143000-01	Rice	plastid	58.33	57.65
KRG89844	Soybean	nucleus	68.25	56.39
KXG19271	Sorghum	plastid	57.94	55.94
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	56.35	54.62
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	56.35	54.41
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	55.56	53.85
VIT_10s0042g00100.t01	Wine grape	mitochondrion	68.25	53.58
Zm00001d045384_P003	Maize	mitochondrion	41.67	52.24
Zm00001d014632_P001	Maize	mitochondrion	31.75	51.95
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	38.1	51.61
Zm00001d036135_P003	Maize	mitochondrion, plastid	52.78	46.83
Solyc06g048410.2.1	Tomato	plastid	45.24	45.78
Solyc06g048420.1.1	Tomato	cytosol	28.97	45.62
HORVU7Hr1G020590.12	Barley	cytosol, plastid	55.95	41.59
Solyc03g095180.2.1	Tomato	plastid	45.24	37.62
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	27.38	30.26

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.4	Gene3D:2.40.500.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314
InterPro:IPR036324	UniProt:K4B4W4	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N
InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088
PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	EnsemblPlantsGene:Solyc02g021140.2
EnsemblPlants:Solyc02g021140.2.1	UniParc:UPI0002768644	:	:	:	:

Description

Superoxide dismutase [Source:UniProtKB/TrEMBL;Acc:K4B4W4]

Coordinates

chr2:-:21771694..21774005

Molecular Weight (calculated)

29127.8 Da

IEP (calculated)

7.177

GRAVY (calculated)

-0.348

Length

252 amino acids

Sequence
(BLAST)

001: MSWCCCNRLS TSTSSDLWRQ FNIPNVGLRQ KKRSVSAYYG LKTPPYKLDA LEPYMSQRMV EIHWGEHHRG YVESLNKQIE NNDIFYGCTM EQLIKLTYNN
101: GNPLPEFSDA AQVWNHDFFW ESMQPGGGDM PKLGFLHQID KDFGSFTNFK DKFIEAALTL FGSGWIWLVL SREEKRLAII KTSNAVNPLV WNDIPLIGLD
201: LWEHAYYLDY KNDKAKYVNV FMNHLVSWDA ALGRMARAQA FVNLGEPKIP VA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.