CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
endoplasmic reticulum 4
extracellular 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89844
KRG90752
KRG92190
KRH33267
KRH33343
KRH34597
KRH36010
KRH70390

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	KRG90752	AT3G54290.1	21798944
AT5G23310.1	KRH33267	AT3G54290.1	21798944
AT5G23310.1	KRH36010	AT3G54290.1	21798944
AT5G23310.1	KRG89844	AT5G23310.1	18996978
AT5G23310.1	KRG92190	AT5G51100.1	18996978
AT5G23310.1	KRH33343	AT5G51100.1	18996978
AT5G23310.1	KRH34597	AT5G51100.1	18996978
AT5G23310.1	KRH70390	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g021140.2.1	Tomato	nucleus	56.39	68.25
GSMUA_Achr10P...	Banana	vacuole	49.51	67.11
Bra026503.1-P	Field mustard	plastid	57.05	66.16
CDX87176	Canola	plastid	56.39	66.15
PGSC0003DMT400046236	Potato	plastid	55.74	65.89
CDY16845	Canola	plastid	56.72	65.78
CDX88013	Canola	plastid	56.39	65.15
Bra009670.1-P	Field mustard	plastid	56.07	65.02
AT5G23310.1	Thale cress	plastid	55.74	64.64
CDY45763	Canola	plastid	55.74	64.64
GSMUA_Achr10P...	Banana	mitochondrion	49.84	63.87
Os06t0143000-01	Rice	plastid	49.84	59.61
KXG19271	Sorghum	plastid	50.49	59.0
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	50.16	58.85
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	50.16	58.62
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	49.84	58.46
VIT_10s0042g00100.t01	Wine grape	mitochondrion	60.33	57.32
Zm00001d045384_P003	Maize	mitochondrion	36.39	55.22
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	32.79	53.76
Zm00001d014632_P001	Maize	mitochondrion	25.57	50.65
Zm00001d036135_P003	Maize	mitochondrion, plastid	45.9	49.3
HORVU7Hr1G020590.12	Barley	cytosol, plastid	49.84	44.84
KRH34597	Soybean	cytosol, nucleus	34.1	42.62
KRG92190	Soybean	cytosol	34.43	42.34
KRH70390	Soybean	plastid	37.7	36.62
KRH33343	Soybean	plastid	36.72	36.13
KRH53764	Soybean	mitochondrion	23.93	30.29
KRH64185	Soybean	mitochondrion	22.95	29.17

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	EntrezGene:100778673	MapMan:15.6.1.2.2.4	Gene3D:2.40.500.20	UniProt:A0A0R0EIY1
EMBL:ACUP02012291	EnsemblPlantsGene:GLYMA_20G050800	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019430
GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	EnsemblPlants:KRG89844	ProteinID:KRG89844
ProteinID:KRG89844.1	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf
PFAM:PF00081	PFAM:PF02777	PRINTS:PR01703	ScanProsite:PS00088	MetaCyc:PWY-6854	InterPro:SOD_C_sf
SUPFAM:SSF46609	SUPFAM:SSF54719	SignalP:SignalP-noTM	UniParc:UPI0003DEC5BD	:	:

Description

hypothetical protein

Coordinates

chr20:+:11060744..11066919

Molecular Weight (calculated)

35109.2 Da

IEP (calculated)

6.888

GRAVY (calculated)

-0.212

Length

305 amino acids

Sequence
(BLAST)

001: MSLFVSISFM NVLTQVQILA NVMGQIYAQN GWFRISTKGN KVAMASCYFN PIPTSSHLIL ADLSRQFKIP KLLHRKKRFD GSPRSSKIAA FYGLTTPPYE
101: LDALEPYMSK RTIDMHWGEY HQNFIEGLNK QLEKDDILYG YTLDELVKVT YNNGNPLPEF NNAAEVWNHD FFWESMQPGG GDMPKLGLLQ QIEKDFGSFT
201: NFREKFIGAA LSLFGSGWVW LVLKREEKRL EIVKTSNAIC PIVWDDIPII NLDLWEHAYY LDYRNDRAKY VDVFMNHLVS WDAAMGRLTR AEAFVNLGEP
301: KIPVA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.