CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 21766870
mitochondrion: 27780359
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64185	Soybean	mitochondrion	91.7	92.08
CDY36283	Canola	cytosol	62.66	83.89
PGSC0003DMT400042937	Potato	mitochondrion	75.1	79.39
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	74.27	78.51
AT3G10920.1	Thale cress	mitochondrion	73.03	76.19
Bra034154.1-P	Field mustard	mitochondrion	72.61	75.76
CDY08564	Canola	mitochondrion	71.78	74.89
CDY08566	Canola	mitochondrion	71.78	74.89
Bra029879.1-P	Field mustard	mitochondrion	71.37	74.46
CDY00976	Canola	mitochondrion	70.95	74.03
Os05t0323900-01	Rice	mitochondrion	70.54	73.59
EES17972	Sorghum	mitochondrion	70.95	73.39
TraesCS2B01G567600.1	Wheat	mitochondrion	68.46	73.33
Zm00001d037859_P002	Maize	mitochondrion	70.95	72.77
TraesCS2D01G538300.1	Wheat	mitochondrion	69.71	72.73
TraesCS2A01G537100.1	Wheat	mitochondrion	69.29	72.29
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	73.44	72.24
GSMUA_Achr3P09840_001	Banana	mitochondrion	70.54	70.54
GSMUA_Achr8P21350_001	Banana	mitochondrion	69.29	70.17
Zm00001d009990_P001	Maize	mitochondrion	70.12	69.55
GSMUA_Achr3P18000_001	Banana	mitochondrion	68.46	67.9
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	66.39	63.24
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	71.37	60.78
KRH34597	Soybean	cytosol, nucleus	31.12	30.74
KRG92190	Soybean	cytosol	29.46	28.63
KRG89844	Soybean	nucleus	30.29	23.93
KRH70390	Soybean	plastid	29.46	22.61
KRH33343	Soybean	plastid	29.05	22.58

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	EntrezGene:100101896	EntrezGene:100785490	Gene3D:2.40.500.20	UniProt:A5JVZ7
EMBL:ACUP02003480	ncoils:Coil	EMBL:EF587264	EnsemblPlantsGene:GLYMA_06G144500	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314
InterPro:IPR036324	EnsemblPlants:KRH53764	ProteinID:KRH53764	ProteinID:KRH53764.1	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS
InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349
PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	MetaCyc:PWY-6854	InterPro:SOD_C_sf
SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0001529499	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:-:11759884..11764010

Molecular Weight (calculated)

26707.9 Da

IEP (calculated)

9.067

GRAVY (calculated)

-0.285

Length

241 amino acids

Sequence
(BLAST)

001: MAARALLTRK TLATVLRNDA KPIIGVGITA AATHSRGLHV YTLPDLDYDY GALEPAISGD IMQLHHQKHH QTYITNYNKA LEQLQDAIAK KDSSAVVKLQ
101: GAIKFNGGGH VNHSIFWKNL APVREGGGEP PKGSLGWAID THFGSFEALI QKVNAEGAAL QGSGWVWLGL DKELKRLVVE TTANQDPLVT KGPNLVPLIG
201: IDVWEHAYYL QYKNVRPDYL KNIWKVINWK YASEVYEKES S

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.