CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36283	Canola	cytosol	72.29	92.78
CDY08564	Canola	mitochondrion	90.91	90.91
CDY08566	Canola	mitochondrion	90.91	90.91
Bra029879.1-P	Field mustard	mitochondrion	90.48	90.48
AT3G10920.1	Thale cress	mitochondrion	88.31	88.31
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	77.06	78.07
PGSC0003DMT400042937	Potato	mitochondrion	75.32	76.32
KRH64185	Soybean	mitochondrion	74.89	72.08
KRH53764	Soybean	mitochondrion	74.03	70.95
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	74.89	70.61
Zm00001d037859_P002	Maize	mitochondrion	71.43	70.21
TraesCS2A01G537100.1	Wheat	mitochondrion	70.13	70.13
Os05t0323900-01	Rice	mitochondrion	70.13	70.13
EES17972	Sorghum	mitochondrion	70.56	69.96
TraesCS2B01G567600.1	Wheat	mitochondrion	67.97	69.78
GSMUA_Achr8P21350_001	Banana	mitochondrion	71.86	69.75
GSMUA_Achr3P09840_001	Banana	mitochondrion	72.73	69.71
TraesCS2D01G538300.1	Wheat	mitochondrion	69.26	69.26
Zm00001d009990_P001	Maize	mitochondrion	70.13	66.67
GSMUA_Achr3P18000_001	Banana	mitochondrion	70.13	66.67
CDY27222	Canola	cytosol	64.07	65.2
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	69.7	63.64
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	74.03	60.42
CDX72144	Canola	endoplasmic reticulum	63.2	60.33
CDY03380	Canola	cytosol	28.57	31.73
CDY34342	Canola	cytosol	29.0	31.46
CDX92676	Canola	cytosol	28.57	30.56
CDY11055	Canola	cytosol	28.57	30.56
CDY38848	Canola	plastid	35.06	27.09
CDX88013	Canola	plastid	30.3	26.52
CDY32644	Canola	plastid	34.2	26.33
CDY45763	Canola	plastid	29.44	25.86
CDX87176	Canola	plastid	29.0	25.77
CDY16845	Canola	plastid	29.0	25.48
CDY05836	Canola	cytosol	21.64	23.15
CDY70727	Canola	mitochondrion	12.99	10.75

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	GO:A0A078EIM3	EnsemblPlants:CDY00976	ProteinID:CDY00976
ProteinID:CDY00976.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00110989001	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD
InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777
PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	MetaCyc:PWY-6854
InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0004EE54A2	SEG:seg	:

Description

BnaC05g42240D

Coordinates

chrLK031923:+:389774..391287

Molecular Weight (calculated)

25434.3 Da

IEP (calculated)

8.406

GRAVY (calculated)

-0.282

Length

231 amino acids

Sequence
(BLAST)

001: MAIRSVLSTR TLSGLKETSS KLLGFRGIQT FTLPDLPYDY SALEPAISGE IMQIHHQKHH QTYVTNYNNA LEQLDQAVNK GDASTVVKLH SAIKFNGGGH
101: VNHSIFWKNL APVNQGGGEP PKGALGGAID THFGSLEGLV KKMSAEGAAL QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGASLVPLVG IDVWEHAYYL
201: QYKNVRPDYL KNVWKVINWK YASEVYESEC K

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.