Factsheet for TraesCS2D01G538300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

mitochondrion: 21043471
mitochondrion: 23895732
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

msms PMID: 23895732 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks (CABiN), M316, The University of Western Australia , 35 Stirling Highway, Crawley, WA 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G537100.1	Wheat	mitochondrion	97.84	97.84
TraesCS2B01G567600.1	Wheat	mitochondrion	92.64	95.11
Os05t0323900-01	Rice	mitochondrion	84.42	84.42
EES17972	Sorghum	mitochondrion	84.85	84.12
Zm00001d037859_P002	Maize	mitochondrion	85.28	83.83
Zm00001d009990_P001	Maize	mitochondrion	84.42	80.25
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	87.88	80.24
CDY36283	Canola	cytosol	60.17	77.22
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	72.73	73.68
PGSC0003DMT400042937	Potato	mitochondrion	71.86	72.81
AT3G10920.1	Thale cress	mitochondrion	72.29	72.29
GSMUA_Achr3P09840_001	Banana	mitochondrion	74.03	70.95
Bra034154.1-P	Field mustard	mitochondrion	70.56	70.56
KRH64185	Soybean	mitochondrion	73.16	70.42
GSMUA_Achr8P21350_001	Banana	mitochondrion	71.86	69.75
KRH53764	Soybean	mitochondrion	72.73	69.71
Bra029879.1-P	Field mustard	mitochondrion	69.7	69.7
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	73.59	69.39
CDY08566	Canola	mitochondrion	69.26	69.26
CDY08564	Canola	mitochondrion	69.26	69.26
CDY00976	Canola	mitochondrion	69.26	69.26
GSMUA_Achr3P18000_001	Banana	mitochondrion	70.13	66.67
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	65.8	53.71
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	29.87	26.54
TraesCS7D01G043000.1	Wheat	plastid	31.6	18.62

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006801	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010043	GO:GO:0042742	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C
InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703
ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719
EnsemblPlantsGene:TraesCS2D01G538300	EnsemblPlants:TraesCS2D01G538300.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:-:619558929..619563312

Molecular Weight (calculated)

25276.2 Da

IEP (calculated)

8.685

GRAVY (calculated)

-0.282

Length

231 amino acids

Sequence
(BLAST)

001: MALRTLAAKK TLGLALGGAR PPAAARGVAT FTLPDLPYDY GALEPAVSGE IMRLHHQKHH ATYVANYNKA LEQLDAAVSK GDASAVVHLQ SAIKFNGGGH
101: VNHSIFWKNL KPISEGGGEA PHGKLGWAID EDFGSIEKLI KKMNAEGAAL QGSGWVWLAL DKEAKRLSVE TTPNQDPLVT KGSNLHPLLG IDVWEHAYYL
201: QYKNVRPDYL TNIWKVVNWK YAGEEYEKVL A

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.