CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009990_P001	Maize	mitochondrion	97.42	93.42
Zm00001d037859_P002	Maize	mitochondrion	93.99	93.19
Os05t0323900-01	Rice	mitochondrion	86.7	87.45
TraesCS2A01G537100.1	Wheat	mitochondrion	85.41	86.15
TraesCS2D01G538300.1	Wheat	mitochondrion	84.12	84.85
TraesCS2B01G567600.1	Wheat	mitochondrion	81.12	84.0
CDY36283	Canola	cytosol	60.52	78.33
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	80.69	74.31
GSMUA_Achr3P09840_001	Banana	mitochondrion	76.82	74.27
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	72.1	73.68
GSMUA_Achr8P21350_001	Banana	mitochondrion	74.68	73.11
KRH64185	Soybean	mitochondrion	75.11	72.92
PGSC0003DMT400042937	Potato	mitochondrion	71.24	72.81
AT3G10920.1	Thale cress	mitochondrion	72.1	72.73
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	75.97	72.24
Bra034154.1-P	Field mustard	mitochondrion	70.82	71.43
Bra029879.1-P	Field mustard	mitochondrion	70.39	71.0
KRH53764	Soybean	mitochondrion	73.39	70.95
CDY08566	Canola	mitochondrion	69.96	70.56
CDY08564	Canola	mitochondrion	69.96	70.56
CDY00976	Canola	mitochondrion	69.96	70.56
GSMUA_Achr3P18000_001	Banana	mitochondrion	73.39	70.37
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	67.38	55.48
KXG19271	Sorghum	plastid	30.47	27.2
KXG19156	Sorghum	plastid	27.47	16.33

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	EntrezGene:8058337	UniProt:C5YVR0	EnsemblPlants:EES17972
ProteinID:EES17972	ProteinID:EES17972.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784
GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006801	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009790	GO:GO:0009791
GO:GO:0009793	GO:GO:0009987	GO:GO:0010043	GO:GO:0016491	GO:GO:0019430	GO:GO:0042742
GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS
InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349
PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	MetaCyc:PWY-6854	InterPro:SOD_C_sf
EnsemblPlantsGene:SORBI_3009G093200	SUPFAM:SSF46609	SUPFAM:SSF54719	unigene:Sbi.18403	UniParc:UPI0001A88B46	RefSeq:XP_002439542.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:23410029..23415591

Molecular Weight (calculated)

25358.2 Da

IEP (calculated)

7.317

GRAVY (calculated)

-0.159

Length

233 amino acids

Sequence
(BLAST)

001: MALRTLASKK ALSFALGGAA RPLAASARGV TTVTLPDLSY DFGALEPAIS GEIMRLHHQK HHATYVANYN KALEQLDAAV AKSDASAVVQ LQGAIKFNGG
101: GHVNHSIFWK NLKPISEGGG EPPHGKLGWA IDEDFGSFEA LVKKMNAEGA ALQGSGWVWL ALDKEAKKLS VETTANQDPL VTKDASLVPL LGIDVWEHAY
201: YLQYKNVRPD YLNNIWKVMN WKYAGEVYEN VLA

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.