Factsheet for Bra029879.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08566	Canola	mitochondrion	99.57	99.57
CDY08564	Canola	mitochondrion	99.57	99.57
Bra034154.1-P	Field mustard	mitochondrion	93.51	93.51
CDY00976	Canola	mitochondrion	90.48	90.48
AT3G10920.1	Thale cress	mitochondrion	86.15	86.15
PGSC0003DMT400042937	Potato	mitochondrion	77.92	78.95
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	74.89	75.88
KRH64185	Soybean	mitochondrion	75.32	72.5
Os05t0323900-01	Rice	mitochondrion	71.43	71.43
KRH53764	Soybean	mitochondrion	74.46	71.37
Zm00001d037859_P002	Maize	mitochondrion	72.29	71.06
TraesCS2B01G567600.1	Wheat	mitochondrion	68.83	70.67
TraesCS2A01G537100.1	Wheat	mitochondrion	70.56	70.56
EES17972	Sorghum	mitochondrion	71.0	70.39
TraesCS2D01G538300.1	Wheat	mitochondrion	69.7	69.7
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	72.29	68.16
GSMUA_Achr8P21350_001	Banana	mitochondrion	69.7	67.65
Zm00001d009990_P001	Maize	mitochondrion	71.0	67.49
GSMUA_Achr3P09840_001	Banana	mitochondrion	70.13	67.22
GSMUA_Achr3P18000_001	Banana	mitochondrion	68.4	65.02
Bra007239.1-P	Field mustard	cytosol	63.2	64.32
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	69.7	63.64
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	73.59	60.07
Bra013863.1-P	Field mustard	cytosol	29.0	31.6
Bra029190.1-P	Field mustard	mitochondrion	33.77	28.89
Bra026503.1-P	Field mustard	plastid	28.14	24.71
Bra009670.1-P	Field mustard	plastid	28.14	24.71
Bra035724.1-P	Field mustard	cytosol	19.91	20.81

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	EnsemblPlantsGene:Bra029879	EnsemblPlants:Bra029879.1	EnsemblPlants:Bra029879.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	UniProt:M4EM59	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS
InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349
PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	InterPro:SOD_C_sf	SUPFAM:SSF46609
SUPFAM:SSF54719	UniParc:UPI0002547846	SEG:seg	:	:	:

Description

AT3G10920 (E=2e-108) MSD1, MEE33, ATMSD1 | MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); metal ion binding / superoxide dismutase

Coordinates

chrA05:-:21889005..21890303

Molecular Weight (calculated)

25415.3 Da

IEP (calculated)

8.837

GRAVY (calculated)

-0.314

Length

231 amino acids

Sequence
(BLAST)

001: MAIRSVASRR TLSSLKESSS KLLGLRGIQT FTLPDLPYDY SALEPAISGE IMQIHHQKHH QTYVTNYNNA LEQLDQAVNK GDASTVVKLH SAIKFNGGGH
101: VNHSIFWKNL APVNQGGGEP PKGALGGAID THFGSLEGLV KKMSAEGAAL QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPDYL KNVWKVINWK YASEVYESEC K

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.