Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27222 | Canola | cytosol | 100.0 | 100.0 |
| AT3G56350.1 | Thale cress | extracellular | 83.7 | 78.84 |
| Bra034154.1-P | Field mustard | mitochondrion | 65.64 | 64.5 |
| Bra029879.1-P | Field mustard | mitochondrion | 64.32 | 63.2 |
| VIT_06s0004g07950.t01 | Wine grape | mitochondrion | 63.0 | 62.72 |
| Bra013863.1-P | Field mustard | cytosol | 28.19 | 30.19 |
| Bra029190.1-P | Field mustard | mitochondrion | 31.72 | 26.67 |
| Bra009670.1-P | Field mustard | plastid | 30.84 | 26.62 |
| Bra026503.1-P | Field mustard | plastid | 30.84 | 26.62 |
| Bra035724.1-P | Field mustard | cytosol | 18.94 | 19.46 |
Protein Annotations
| Gene3D:1.10.287.990 | MapMan:10.2.2.2 | Gene3D:2.40.500.20 | EnsemblPlantsGene:Bra007239 | EnsemblPlants:Bra007239.1 | EnsemblPlants:Bra007239.1-P |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004784 | GO:GO:0005488 | GO:GO:0006801 |
| GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009791 | GO:GO:0009838 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0010227 | GO:GO:0016491 | GO:GO:0019430 | GO:GO:0046872 |
| GO:GO:0055114 | InterPro:IPR036314 | InterPro:IPR036324 | UniProt:M4CSP7 | InterPro:Mn/Fe_SOD | InterPro:Mn/Fe_SOD_BS |
| InterPro:Mn/Fe_SOD_C | InterPro:Mn/Fe_SOD_N | InterPro:Mn/Fe_SOD_N_sf | PFAM:PF00081 | PFAM:PF02777 | PIRSF:PIRSF000349 |
| PRINTS:PR01703 | ScanProsite:PS00088 | PANTHER:PTHR11404 | PANTHER:PTHR11404:SF6 | InterPro:SOD_C_sf | SUPFAM:SSF46609 |
| SUPFAM:SSF54719 | UniParc:UPI0002542B84 | : | : | : | : |
Description
AT3G56350 (E=6e-117) | superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative
Coordinates
chrA09:-:28149483..28150731
Molecular Weight (calculated)
25450.2 Da
IEP (calculated)
6.707
GRAVY (calculated)
-0.428
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLDVGTGKT TMEPCLESMK TASLPDLPYA YDALEPAISE EIMRLHHLKH HQTYVTNYNK ALDHLRSALS SGDHSSVVKL QSQIKFNGGG HVNHAIFWKN
101: LAPVHEGGGK PPQDPLSSAI DAHFGSLEEL MQKMNSEGAA VQGSGWVWFG LDKELKRLVV ETTANQDPLV TKGSHLVPLI GIDVWEHAYY PQYKNARAEY
201: LKNIWTVINW KYASDIFEKH NRGLNEF
101: LAPVHEGGGK PPQDPLSSAI DAHFGSLEEL MQKMNSEGAA VQGSGWVWFG LDKELKRLVV ETTANQDPLV TKGSHLVPLI GIDVWEHAYY PQYKNARAEY
201: LKNIWTVINW KYASDIFEKH NRGLNEF
001: MTTTVIIIIF VAIFATTLHD ARGATMEPCL ESMKTASLPD LPYAYDALEP AISEEIMRLH HQKHHQTYVT QYNKALNSLR SAMADGDHSS VVKLQSLIKF
101: NGGGHVNHAI FWKNLAPVHE GGGKPPHDPL ASAIDAHFGS LEGLIQKMNA EGAAVQGSGW VWFGLDRELK RLVVETTANQ DPLVTKGSHL VPLIGIDVWE
201: HAYYPQYKNA RAEYLKNIWT VINWKYAADV FEKHTRDLDI N
101: NGGGHVNHAI FWKNLAPVHE GGGKPPHDPL ASAIDAHFGS LEGLIQKMNA EGAAVQGSGW VWFGLDRELK RLVVETTANQ DPLVTKGSHL VPLIGIDVWE
201: HAYYPQYKNA RAEYLKNIWT VINWKYAADV FEKHTRDLDI N
Arabidopsis Description
MSD2Superoxide dismutase [Source:UniProtKB/TrEMBL;Acc:A0A178VDJ0]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.