CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007239.1-P	Field mustard	cytosol	100.0	100.0
CDX72144	Canola	endoplasmic reticulum	88.55	83.06
AT3G56350.1	Thale cress	extracellular	83.7	78.84
CDY36283	Canola	cytosol	57.27	72.22
CDY00976	Canola	mitochondrion	65.2	64.07
CDY08566	Canola	mitochondrion	64.32	63.2
CDY08564	Canola	mitochondrion	64.32	63.2
VIT_06s0004g07950.t01	Wine grape	mitochondrion	63.0	62.72
CDY34342	Canola	cytosol	28.19	30.05
CDY03380	Canola	cytosol	27.31	29.81
CDX92676	Canola	cytosol	27.75	29.17
CDY11055	Canola	cytosol	27.75	29.17
CDX88013	Canola	plastid	31.28	26.89
CDY16845	Canola	plastid	30.84	26.62
CDY45763	Canola	plastid	30.84	26.62
CDX87176	Canola	plastid	30.4	26.54
CDY38848	Canola	plastid	32.16	24.41
CDY32644	Canola	plastid	30.84	23.33
CDY05836	Canola	cytosol	19.82	20.83
CDY70727	Canola	mitochondrion	12.78	10.39

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	GO:A0A078GPU8	UniProt:A0A078GPU8	EnsemblPlants:CDY27222
ProteinID:CDY27222	ProteinID:CDY27222.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491
GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00037096001	InterPro:IPR036314	InterPro:IPR036324
InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081
PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6
MetaCyc:PWY-6854	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0002542B84	:

Description

BnaA09g35800DSuperoxide dismutase [Source:UniProtKB/TrEMBL;Acc:A0A078GPU8]

Coordinates

chrLK032201:+:225921..227403

Molecular Weight (calculated)

25450.2 Da

IEP (calculated)

6.707

GRAVY (calculated)

-0.428

Length

227 amino acids

Sequence
(BLAST)

001: MSLDVGTGKT TMEPCLESMK TASLPDLPYA YDALEPAISE EIMRLHHLKH HQTYVTNYNK ALDHLRSALS SGDHSSVVKL QSQIKFNGGG HVNHAIFWKN
101: LAPVHEGGGK PPQDPLSSAI DAHFGSLEEL MQKMNSEGAA VQGSGWVWFG LDKELKRLVV ETTANQDPLV TKGSHLVPLI GIDVWEHAYY PQYKNARAEY
201: LKNIWTVINW KYASDIFEKH NRGLNEF

Best Arabidopsis Sequence Match ( AT3G56350.1 )
(BLAST)

001: MTTTVIIIIF VAIFATTLHD ARGATMEPCL ESMKTASLPD LPYAYDALEP AISEEIMRLH HQKHHQTYVT QYNKALNSLR SAMADGDHSS VVKLQSLIKF
101: NGGGHVNHAI FWKNLAPVHE GGGKPPHDPL ASAIDAHFGS LEGLIQKMNA EGAAVQGSGW VWFGLDRELK RLVVETTANQ DPLVTKGSHL VPLIGIDVWE
201: HAYYPQYKNA RAEYLKNIWT VINWKYAADV FEKHTRDLDI N

Arabidopsis Description

MSD2Superoxide dismutase [Source:UniProtKB/TrEMBL;Acc:A0A178VDJ0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.