Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007239.1-P | Field mustard | cytosol | 78.84 | 83.7 |
| CDY27222 | Canola | cytosol | 78.84 | 83.7 |
| CDX72144 | Canola | endoplasmic reticulum | 83.4 | 83.06 |
| AT3G10920.1 | Thale cress | mitochondrion | 63.49 | 66.23 |
| VIT_06s0004g07950.t01 | Wine grape | mitochondrion | 56.02 | 59.21 |
| AT4G25100.2 | Thale cress | plastid | 26.14 | 29.72 |
| AT5G23310.1 | Thale cress | plastid | 29.88 | 27.38 |
| AT5G51100.1 | Thale cress | plastid | 29.88 | 23.61 |
Protein Annotations
| Gene3D:1.10.287.990 | MapMan:10.2.2.2 | Gene3D:2.40.500.20 | EntrezGene:824802 | UniProt:A0A178VDJ0 | ProteinID:AEE79512.1 |
| ArrayExpress:AT3G56350 | EnsemblPlantsGene:AT3G56350 | RefSeq:AT3G56350 | TAIR:AT3G56350 | RefSeq:AT3G56350-TAIR-G | EnsemblPlants:AT3G56350.1 |
| TAIR:AT3G56350.1 | EMBL:AY151395 | Unigene:At.34942 | EMBL:BT004168 | ProteinID:CAB87434.1 | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004784 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005759 | GO:GO:0006801 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009791 | GO:GO:0009838 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0010227 | GO:GO:0016491 | GO:GO:0019430 | GO:GO:0046872 | GO:GO:0055114 |
| InterPro:IPR036314 | InterPro:IPR036324 | InterPro:Mn/Fe_SOD | InterPro:Mn/Fe_SOD_BS | InterPro:Mn/Fe_SOD_C | InterPro:Mn/Fe_SOD_N |
| InterPro:Mn/Fe_SOD_N_sf | RefSeq:NP_191194.1 | ProteinID:OAP04289.1 | PFAM:PF00081 | PFAM:PF02777 | PIRSF:PIRSF000349 |
| PO:PO:0000034 | PO:PO:0000056 | PO:PO:0007010 | PO:PO:0007131 | PO:PO:0009005 | PO:PO:0009010 |
| PO:PO:0009046 | PO:PO:0025281 | PRINTS:PR01703 | ScanProsite:PS00088 | PANTHER:PTHR11404 | PANTHER:PTHR11404:SF6 |
| UniProt:Q9LYK8 | InterPro:SOD_C_sf | SUPFAM:SSF46609 | SUPFAM:SSF54719 | SignalP:SignalP-noTM | UniParc:UPI00000ABFFF |
| SEG:seg | : | : | : | : | : |
Description
MSD2Superoxide dismutase [Source:UniProtKB/TrEMBL;Acc:A0A178VDJ0]
Coordinates
chr3:-:20893946..20895634
Molecular Weight (calculated)
26893.1 Da
IEP (calculated)
6.757
GRAVY (calculated)
-0.198
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTVIIIIF VAIFATTLHD ARGATMEPCL ESMKTASLPD LPYAYDALEP AISEEIMRLH HQKHHQTYVT QYNKALNSLR SAMADGDHSS VVKLQSLIKF
101: NGGGHVNHAI FWKNLAPVHE GGGKPPHDPL ASAIDAHFGS LEGLIQKMNA EGAAVQGSGW VWFGLDRELK RLVVETTANQ DPLVTKGSHL VPLIGIDVWE
201: HAYYPQYKNA RAEYLKNIWT VINWKYAADV FEKHTRDLDI N
101: NGGGHVNHAI FWKNLAPVHE GGGKPPHDPL ASAIDAHFGS LEGLIQKMNA EGAAVQGSGW VWFGLDRELK RLVVETTANQ DPLVTKGSHL VPLIGIDVWE
201: HAYYPQYKNA RAEYLKNIWT VINWKYAADV FEKHTRDLDI N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.