CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 1
extracellular 5
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27222	Canola	cytosol	83.06	88.55
AT3G56350.1	Thale cress	extracellular	83.06	83.4
CDY36283	Canola	cytosol	55.37	74.44
CDY08564	Canola	mitochondrion	62.4	65.37
CDY08566	Canola	mitochondrion	62.4	65.37
CDY00976	Canola	mitochondrion	60.33	63.2
VIT_06s0004g07950.t01	Wine grape	mitochondrion	56.2	59.65
CDY03380	Canola	cytosol	25.21	29.33
CDY34342	Canola	cytosol	25.62	29.11
CDY11055	Canola	cytosol	25.62	28.7
CDX92676	Canola	cytosol	25.62	28.7
CDY16845	Canola	plastid	29.34	27.0
CDY45763	Canola	plastid	28.93	26.62
CDX87176	Canola	plastid	28.51	26.54
CDX88013	Canola	plastid	28.93	26.52
CDY38848	Canola	plastid	30.58	24.75
CDY32644	Canola	plastid	28.93	23.33
CDY05836	Canola	cytosol	18.59	20.83
CDY70727	Canola	mitochondrion	12.4	10.75

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	GO:A0A078C7K8	EnsemblPlants:CDX72144	ProteinID:CDX72144
ProteinID:CDX72144.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00155965001	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C
InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703
ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	MetaCyc:PWY-6854	InterPro:SOD_C_sf	SUPFAM:SSF46609
SUPFAM:SSF54719	SignalP:SignalP-noTM	UniParc:UPI0004EE09D9	:	:	:

Description

BnaC08g27300D

Coordinates

chrLK031795:+:2657587..2659693

Molecular Weight (calculated)

27115.4 Da

IEP (calculated)

6.630

GRAVY (calculated)

-0.234

Length

242 amino acids

Sequence
(BLAST)

001: MIIVVSIILL TVFAMSIDVG TGKSTTMDPC LESMKTASLP DLPYAYDALE PAISEEIMRL HHQKHHQTYV TNYNKALEHL RSALADGDHS SVVKLQSQIK
101: FNGGGHVNHA IFWKNLAPVH EGGGKPPHDP LSSAIDAHFG SLEELMQKMN TEGAAVQGSG WVWFGLDKEL KRLVVETTAN QDPLVTKGSH LVPLVGIDVW
201: EHAYYPQYKN ARAEYLKNIW TVINWKYASD IFVKHNRDLN EF

Best Arabidopsis Sequence Match ( AT3G56350.1 )
(BLAST)

001: MTTTVIIIIF VAIFATTLHD ARGATMEPCL ESMKTASLPD LPYAYDALEP AISEEIMRLH HQKHHQTYVT QYNKALNSLR SAMADGDHSS VVKLQSLIKF
101: NGGGHVNHAI FWKNLAPVHE GGGKPPHDPL ASAIDAHFGS LEGLIQKMNA EGAAVQGSGW VWFGLDRELK RLVVETTANQ DPLVTKGSHL VPLIGIDVWE
201: HAYYPQYKNA RAEYLKNIWT VINWKYAADV FEKHTRDLDI N

Arabidopsis Description

MSD2Superoxide dismutase [Source:UniProtKB/TrEMBL;Acc:A0A178VDJ0]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.