CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80461
CDX86843
CDX87176
CDX88013
CDY01754
CDY05402
CDY05452
CDY08148
CDY16845
CDY28576
CDY28577
CDY45763
CDY68276
CDY69515
CDY71004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	CDY01754	AT1G69690.1	21798944
AT5G51100.1	CDY28576	AT1G69690.1	21798944
AT5G51100.1	CDY28577	AT1G69690.1	21798944
AT5G51100.1	CDY68276	AT1G69690.1	21798944
AT5G51100.1	CDY08148	AT3G49580.1	21798944
AT5G51100.1	CDX86843	AT4G10800.1	21798944
AT5G51100.1	CDY71004	AT4G10800.1	21798944
AT5G51100.1	CDX87176	AT5G23310.1	18996978
AT5G51100.1	CDX88013	AT5G23310.1	18996978
AT5G51100.1	CDY16845	AT5G23310.1	18996978
AT5G51100.1	CDY45763	AT5G23310.1	18996978
AT5G51100.1	CDX80461	AT5G24660.1	21798944
AT5G51100.1	CDY05402	AT5G24660.1	21798944
AT5G51100.1	CDY05452	AT5G24660.1	21798944
AT5G51100.1	CDY69515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029190.1-P	Field mustard	mitochondrion	28.32	29.26
CDY32644	Canola	plastid	28.67	26.67
AT5G51100.1	Thale cress	plastid	27.96	25.57
CDY38848	Canola	plastid	27.24	25.42
KRH34597	Soybean	cytosol, nucleus	21.51	24.59
KRG92190	Soybean	cytosol	21.51	24.19
CDY03380	Canola	cytosol	17.92	24.04
CDX92676	Canola	cytosol	18.28	23.61
CDY34342	Canola	cytosol	17.92	23.47
Solyc06g048410.2.1	Tomato	plastid	20.79	23.29
CDY11055	Canola	cytosol	17.56	22.69
PGSC0003DMT400070920	Potato	extracellular, plastid	20.43	22.62
CDY16845	Canola	plastid	20.43	21.67
CDX88013	Canola	plastid	20.07	21.21
CDX87176	Canola	plastid	19.71	21.15
KRH70390	Soybean	plastid	23.66	21.02
VIT_16s0013g00260.t01	Wine grape	plastid	22.94	20.91
CDY45763	Canola	plastid	19.71	20.91
Solyc03g095180.2.1	Tomato	plastid	22.58	20.79
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	22.22	20.46
KRH33343	Soybean	plastid	21.86	19.68
Solyc06g048420.1.1	Tomato	cytosol	10.04	17.5
GSMUA_Achr11P...	Banana	plastid	18.28	16.94
CDY00976	Canola	mitochondrion	10.75	12.99
CDY27222	Canola	cytosol	10.39	12.78
CDY08566	Canola	mitochondrion	10.39	12.55
CDY08564	Canola	mitochondrion	10.39	12.55
Os06t0115400-01	Rice	plastid	17.56	12.53
KXG19156	Sorghum	plastid	17.56	12.5
CDX72144	Canola	endoplasmic reticulum	10.75	12.4
TraesCS4A01G434000.1	Wheat	plastid	16.85	12.02
HORVU7Hr1G008390.6	Barley	plastid	16.85	11.41
TraesCS7D01G043000.1	Wheat	plastid	14.7	10.46
TraesCS7A01G048600.1	Wheat	mitochondrion	14.7	10.43
CDY36283	Canola	cytosol	6.09	9.44
CDY05836	Canola	cytosol	2.87	3.7
Zm00001d038235_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.287.990	MapMan:35.1	GO:A0A078JYJ8	UniProt:A0A078JYJ8	EnsemblPlants:CDY70727	ProteinID:CDY70727
ProteinID:CDY70727.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019430	GO:GO:0046872
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00007080001	InterPro:IPR036324	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081
PANTHER:PTHR42769	PANTHER:PTHR42769:SF8	MetaCyc:PWY-6854	SUPFAM:SSF46609	UniParc:UPI0004EF19E0	SEG:seg

Description

BnaCnng69530DBnaCnng69530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYJ8]

Coordinates

chrLK043079:+:372..2564

Molecular Weight (calculated)

31721.3 Da

IEP (calculated)

10.018

GRAVY (calculated)

-0.163

Length

279 amino acids

Sequence
(BLAST)

001: MVHRSFLFSL RSSACLKERW RVASSMGLFF PDLCFTGINF FDPFRKSGVV ARRFSARLVS CGESSPLRNP GGFRCISPTR TRRLGRRVSV SSSWWWRVQV
101: VARRRRQVVY GSGGFLVLLA MDWEEEVETC SPAPINWNQP VITDVGSGVM ISGFVCVSFL ESGLEFNEKR FSRKVAFITA GFELKPPPYP LDALEPHMSQ
201: ETLDYHWGKH HKTYVENLNK QIVGTDLDGL SLEEVVLLSY NRGNMLPAFN NVAQVLGVDL HPPSRPIKTM NYTHFVRKP

Best Arabidopsis Sequence Match ( AT5G51100.1 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID
301: VSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.