Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d037859_P002 | Maize | mitochondrion | 93.33 | 5.96 |
| Zm00001d009990_P001 | Maize | mitochondrion | 93.33 | 5.76 |
| CDY05836 | Canola | cytosol | 20.0 | 1.39 |
| Bra035724.1-P | Field mustard | cytosol | 20.0 | 1.36 |
| Bra029190.1-P | Field mustard | mitochondrion | 20.0 | 1.11 |
| CDY38848 | Canola | plastid | 20.0 | 1.0 |
| CDY32644 | Canola | plastid | 20.0 | 1.0 |
| AT5G51100.1 | Thale cress | plastid | 20.0 | 0.98 |
| Zm00001d014632_P001 | Maize | mitochondrion | 6.67 | 0.65 |
| Zm00001d025106_P003 | Maize | cytosol, mitochondrion, plastid | 6.67 | 0.54 |
| Zm00001d045538_P001 | Maize | plastid | 13.33 | 0.52 |
| Zm00001d045384_P003 | Maize | mitochondrion | 6.67 | 0.5 |
| Zm00001d036135_P003 | Maize | mitochondrion, plastid | 6.67 | 0.35 |
| CDY70727 | Canola | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d038235_P001 | EnsemblPlants:Zm00001d038235_T001 | EnsemblPlantsGene:Zm00001d038235 | ProteinID:AQK86097.1 | UniParc:UPI0008438C38 | UniProt:A0A1D6M4P1 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:152163860..152165324
Molecular Weight (calculated)
1787.1 Da
IEP (calculated)
4.258
GRAVY (calculated)
-0.273
Length
15 amino acids
Sequence
(BLAST)
(BLAST)
1: MNWKYAGEVY ENVLA
001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N
Arabidopsis Description
MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.