Factsheet for Zm00001d045538_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19156	Sorghum	plastid	79.02	77.81
TraesCS7D01G043000.1	Wheat	plastid	64.51	63.52
TraesCS7A01G048600.1	Wheat	mitochondrion	63.73	62.6
TraesCS4A01G434000.1	Wheat	plastid	61.66	60.87
Os06t0115400-01	Rice	plastid	59.59	58.82
HORVU7Hr1G008390.6	Barley	plastid	61.14	57.28
KRH34597	Soybean	cytosol, nucleus	29.79	47.13
Solyc06g048420.1.1	Tomato	cytosol	19.43	46.88
Solyc06g048410.2.1	Tomato	plastid	30.05	46.59
PGSC0003DMT400070920	Potato	extracellular, plastid	29.79	45.63
KRG92190	Soybean	cytosol	29.02	45.16
GSMUA_Achr11P...	Banana	plastid	34.72	44.52
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	34.72	44.22
Solyc03g095180.2.1	Tomato	plastid	34.72	44.22
VIT_16s0013g00260.t01	Wine grape	plastid	33.16	41.83
KRH33343	Soybean	plastid	32.38	40.32
KRH70390	Soybean	plastid	31.87	39.17
Zm00001d045384_P003	Maize	mitochondrion	19.17	36.82
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	16.84	34.95
Zm00001d014632_P001	Maize	mitochondrion	12.69	31.82
Zm00001d036135_P003	Maize	mitochondrion, plastid	22.54	30.63
Zm00001d037859_P002	Maize	mitochondrion	17.88	29.36
Zm00001d009990_P001	Maize	mitochondrion	17.62	27.98
Zm00001d038235_P001	Maize	cytosol	0.52	13.33

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	EntrezGene:100274012	Gene3D:2.40.500.20	ProteinID:AQL02516.1	EMBL:BT061697
UniProt:C0HH91	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019430	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C
InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PRINTS:PR01703	ScanProsite:PS00088
PANTHER:PTHR42769	PANTHER:PTHR42769:SF3	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0001948825	EnsemblPlantsGene:Zm00001d045538	EnsemblPlants:Zm00001d045538_P001	EnsemblPlants:Zm00001d045538_T001	SEG:seg

Description

Superoxide dismutase

Coordinates

chr9:+:25846589..25849271

Molecular Weight (calculated)

42868.4 Da

IEP (calculated)

5.812

GRAVY (calculated)

-0.506

Length

386 amino acids

Sequence
(BLAST)

001: MASTALVAVA VGGAISLGLV ASSGVASCSL RAGGDSRRFG PRLVLLRRGG AEGEGTRTRN CPIFRCANKV DVVTEDDSVD GDVTDDGEDL EDAADDAIDA
101: DVGTEDELES SLPEDVEWIK QQPLPYPLDA LEPYISKETV EQHWGVHQQI HVDRLNGMIG GSEWEGMSLG QMMLASFNEG REQPHPPFFH AAQVWNHDFY
201: WRSMKPGGGG KPPERLLKFI NRDFGSHEGM IRQFMDAALT QFGSGWVWLS YKGSGLPYVK SRSPIPSDNH GRLVISKTPN AINPLVWGHS PLLAIDVWEH
301: AYYLDYEDRR ADYVSAILEK LVSWETVESR LAKAVARAVE RDEHLRRRIL RKQRLAQANG QSRARSRARQ GRQGDQEVAR SRPVEA

Best Arabidopsis Sequence Match ( AT5G51100.1 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID
301: VSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.