CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89844
KRG99108
KRH16959
KRH45889
KRH53667
KRH56238
KRH62719
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	KRG99108	AT1G69690.1	21798944
AT5G51100.1	KRH45889	AT1G69690.1	21798944
AT5G51100.1	KRH16959	AT3G49580.1	21798944
AT5G51100.1	KRH53667	AT3G49580.1	21798944
AT5G51100.1	KRH64261	AT3G49580.1	21798944
AT5G51100.1	KRH56238	AT4G10800.1	21798944
AT5G51100.1	KRH62719	AT4G10800.1	21798944
AT5G51100.1	KRG89844	AT5G23310.1	18996978
AT5G51100.1	KRH16959	AT5G24660.1	21798944
AT5G51100.1	KRH53667	AT5G24660.1	21798944
AT5G51100.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70390	Soybean	plastid	79.03	78.03
KRH34597	Soybean	cytosol, nucleus	56.45	71.72
KRG92190	Soybean	cytosol	56.77	70.97
CDY03380	Canola	cytosol	45.81	68.27
Bra013863.1-P	Field mustard	cytosol	46.45	67.92
CDY34342	Canola	cytosol	46.45	67.61
AT4G25100.2	Thale cress	plastid	45.81	66.98
CDY11055	Canola	cytosol	45.48	65.28
CDX92676	Canola	cytosol	45.48	65.28
Solyc06g048410.2.1	Tomato	plastid	51.94	64.66
Solyc06g048420.1.1	Tomato	cytosol	32.58	63.12
PGSC0003DMT400070920	Potato	extracellular, plastid	50.32	61.9
VIT_16s0013g00260.t01	Wine grape	plastid	60.32	61.11
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	58.39	59.74
Solyc03g095180.2.1	Tomato	plastid	58.06	59.41
Bra029190.1-P	Field mustard	mitochondrion	50.32	57.78
CDY38848	Canola	plastid	52.9	54.85
AT5G51100.1	Thale cress	plastid	53.87	54.75
CDY32644	Canola	plastid	52.26	54.0
GSMUA_Achr11P...	Banana	plastid	51.94	53.49
CDY05836	Canola	cytosol	28.71	41.2
Bra035724.1-P	Field mustard	cytosol	26.77	37.56
KRG89844	Soybean	nucleus	36.13	36.72
Zm00001d045538_P001	Maize	plastid	40.32	32.38
Os06t0115400-01	Rice	plastid	39.03	30.95
TraesCS4A01G434000.1	Wheat	plastid	39.03	30.95
TraesCS7D01G043000.1	Wheat	plastid	39.03	30.87
TraesCS7A01G048600.1	Wheat	mitochondrion	38.06	30.03
KRH64185	Soybean	mitochondrion	23.23	30.0
KXG19156	Sorghum	plastid	37.74	29.85
HORVU7Hr1G008390.6	Barley	plastid	39.35	29.61
KRH53764	Soybean	mitochondrion	22.58	29.05
CDY70727	Canola	mitochondrion	19.68	21.86

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	EntrezGene:100813221	MapMan:15.6.1.2.2.9	Gene3D:2.40.500.20	EMBL:ACUP02006473
ncoils:Coil	EnsemblPlantsGene:GLYMA_10G117100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019430
GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	UniProt:K7LIT3	EnsemblPlants:KRH33343
ProteinID:KRH33343	ProteinID:KRH33343.1	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N
InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769
PANTHER:PTHR42769:SF8	MetaCyc:PWY-6854	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI000294CF9F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:29463443..29473883

Molecular Weight (calculated)

35265.2 Da

IEP (calculated)

5.025

GRAVY (calculated)

-0.562

Length

310 amino acids

Sequence
(BLAST)

001: MNLLSSPSSA ASTSLSPSCF LPCYPHHAGF SSGTFKFSKK ESRCIRKAGS ITAKFELKPP PYPLNSLEPI MSEETIEYHW GKHHRTYVDN LNRQIDGTDL
101: DGNSLEDTMV ILYNKGDILP AFNNAAQAWN HDFFWESMKP GGGGRPSGEL LKLIERDFGS LKKFLDEFKT AASAQFGSGW AWLAYKESRL DVGNVLNPLQ
201: SDEDKKLVVV KTPNAVNPLV WNYYYPLLTI DVWEHAYFID FQNQRRDYIS VFMDKLVSWD AVSSRLEQAK ALIEEREREA ERKRRDEEKP TSSEATPEIF
301: SDSDADLDVE

Best Arabidopsis Sequence Match ( AT5G51100.5 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSHAYYLDFE NRRAEYINTF MEKLVSWETV STRLESAIAR AVQREQEGTE TEDEENPDDE VPEVYLDSDI DVSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.