Factsheet for Bra035724.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003986.1-P
Bra004407.1-P
Bra007875.1-P
Bra009670.1-P
Bra009783.1-P
Bra017974.1-P
Bra020466.1-P
Bra026503.1-P
Bra035273.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	Bra003986.1-P	AT1G69690.1	21798944
AT5G51100.1	Bra004407.1-P	AT1G69690.1	21798944
AT5G51100.1	Bra007875.1-P	AT1G69690.1	21798944
AT5G51100.1	Bra017974.1-P	AT3G49580.1	21798944
AT5G51100.1	Bra035273.1-P	AT4G10800.1	21798944
AT5G51100.1	Bra009670.1-P	AT5G23310.1	18996978
AT5G51100.1	Bra026503.1-P	AT5G23310.1	18996978
AT5G51100.1	Bra009783.1-P	AT5G24660.1	21798944
AT5G51100.1	Bra020466.1-P	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05836	Canola	cytosol	88.69	90.74
Bra029190.1-P	Field mustard	mitochondrion	55.2	45.19
AT5G51100.1	Thale cress	plastid	57.47	41.64
Solyc06g048420.1.1	Tomato	cytosol	23.98	33.12
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	43.89	32.01
Solyc03g095180.2.1	Tomato	plastid	43.44	31.68
Bra013863.1-P	Field mustard	cytosol	28.05	29.25
KRH34597	Soybean	cytosol, nucleus	31.22	28.28
VIT_16s0013g00260.t01	Wine grape	plastid	38.91	28.1
GSMUA_Achr11P...	Banana	plastid	38.01	27.91
KRG92190	Soybean	cytosol	31.22	27.82
Solyc06g048410.2.1	Tomato	plastid	30.32	26.91
KRH33343	Soybean	plastid	37.56	26.77
PGSC0003DMT400070920	Potato	extracellular, plastid	29.86	26.19
KRH70390	Soybean	plastid	37.1	26.11
Zm00001d038235_P001	Maize	cytosol	1.36	20.0
Bra034154.1-P	Field mustard	mitochondrion	20.81	19.91
Bra029879.1-P	Field mustard	mitochondrion	20.81	19.91
Bra007239.1-P	Field mustard	cytosol	19.46	18.94
Bra026503.1-P	Field mustard	plastid	22.17	18.63
Bra009670.1-P	Field mustard	plastid	21.72	18.25
Os06t0115400-01	Rice	plastid	32.13	18.16
TraesCS7A01G048600.1	Wheat	mitochondrion	31.22	17.56
TraesCS4A01G434000.1	Wheat	plastid	30.32	17.14
TraesCS7D01G043000.1	Wheat	plastid	30.32	17.09
KXG19156	Sorghum	plastid	28.96	16.33
HORVU7Hr1G008390.6	Barley	plastid	30.32	16.26

Protein Annotations

Gene3D:2.40.500.20	MapMan:35.1	EnsemblPlantsGene:Bra035724	EnsemblPlants:Bra035724.1	EnsemblPlants:Bra035724.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314
UniProt:M4F3S4	InterPro:Mn/Fe_SOD_C	PFAM:PF02777	PANTHER:PTHR42769	PANTHER:PTHR42769:SF3	InterPro:SOD_C_sf
SUPFAM:SSF54719	UniParc:UPI0002543E2C	SEG:seg	:	:	:

Description

AT5G51100 (E=6e-053) FSD2 | FSD2 (FE SUPEROXIDE DISMUTASE 2); superoxide dismutase

Coordinates

chrA04:+:12523379..12525808

Molecular Weight (calculated)

24969.3 Da

IEP (calculated)

4.361

GRAVY (calculated)

-0.478

Length

221 amino acids

Sequence
(BLAST)

001: MNFRSPSSHT SDLLLSILQI CSSDITDELS EEDDALRKRG RRQVKKEEFG FEIALGAMEF SVRCDPAKLQ IGPSLLSIKS LDGKKKIERF KAAAASNFGS
101: GWTWLAYKAN RLDVANAINP LPTEEDKKLV IVKTPNAVNP LVWDYSPLLA IDTWENRRAE YINIFMEKLV SWETVSTRLE SAMARAAQRE QEGTYTEDEE
201: NSEDEEPEVY LDSDVDVSVV D

Best Arabidopsis Sequence Match ( AT5G51100.6 )
(BLAST)

001: MSRETLDYHW GKHHKTYVEN LNKQILGTDL DALSLEEVVL LSYNKGNMLP AFNNAAQAWN HEFFWESIQP GGGGKPTGEL LRLIERDFGS FEEFLERFKS
101: AAASNFGSGW TWLAYKANRL DVANAVNPLP KEEDKKLVIV KTPNAVNPLV WDYSPLLTID TWEHAYYLDF ENRRAEYINT FMEKLVSWET VSTRLESAIA
201: RAVQREQEGT ETEDEENPDD EVPEVYLDSD IDVSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.