Factsheet for VIT_16s0013g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02200.t01
VIT_02s0025g02270.t01
VIT_10s0042g00100.t01
VIT_16s0098g00600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	VIT_01s0026g02200.t01	AT1G69690.1	21798944
AT5G51100.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT5G51100.1	VIT_02s0025g02270.t01	AT4G10800.1	21798944
AT5G51100.1	VIT_10s0042g00100.t01	AT5G23310.1	18996978
AT5G51100.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g048410.2.1	Tomato	plastid	57.84	71.08
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	69.61	70.3
CDY03380	Canola	cytosol	47.71	70.19
Solyc03g095180.2.1	Tomato	plastid	69.28	69.97
AT4G25100.2	Thale cress	plastid	48.37	69.81
PGSC0003DMT400070920	Potato	extracellular, plastid	57.19	69.44
Bra013863.1-P	Field mustard	cytosol	48.04	69.34
CDY34342	Canola	cytosol	48.04	69.01
KRH34597	Soybean	cytosol, nucleus	54.9	68.85
Solyc06g048420.1.1	Tomato	cytosol	35.95	68.75
CDY11055	Canola	cytosol	48.04	68.06
KRG92190	Soybean	cytosol	54.25	66.94
CDX92676	Canola	cytosol	47.06	66.67
KRH70390	Soybean	plastid	65.69	64.01
Bra029190.1-P	Field mustard	mitochondrion	54.25	61.48
KRH33343	Soybean	plastid	61.11	60.32
CDY32644	Canola	plastid	55.56	56.67
AT5G51100.1	Thale cress	plastid	55.88	56.07
GSMUA_Achr11P...	Banana	plastid	54.9	55.81
CDY38848	Canola	plastid	54.25	55.52
CDY05836	Canola	cytosol	31.05	43.98
Bra035724.1-P	Field mustard	cytosol	28.1	38.91
VIT_10s0042g00100.t01	Wine grape	mitochondrion	40.52	38.63
Zm00001d045538_P001	Maize	plastid	41.83	33.16
VIT_06s0004g07950.t01	Wine grape	mitochondrion	23.86	32.02
Os06t0115400-01	Rice	plastid	40.52	31.71
KXG19156	Sorghum	plastid	40.2	31.38
TraesCS7D01G043000.1	Wheat	plastid	39.87	31.12
TraesCS7A01G048600.1	Wheat	mitochondrion	39.22	30.53
TraesCS4A01G434000.1	Wheat	plastid	38.89	30.43
HORVU7Hr1G008390.6	Barley	plastid	39.54	29.37
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	25.82	27.92
CDY70727	Canola	mitochondrion	20.91	22.94

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	EntrezGene:100258067	wikigene:100258067	MapMan:15.6.1.2.2.9	Gene3D:2.40.500.20
ProteinID:CBI38556	ProteinID:CBI38556.3	ncoils:Coil	UniProt:D7U742	EMBL:FN596738	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314
InterPro:IPR036324	EntrezGene:LOC100258067	wikigene:LOC100258067	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C
InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PRINTS:PR01703	ScanProsite:PS00088
PANTHER:PTHR42769	PANTHER:PTHR42769:SF8	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0001984D69
ArrayExpress:VIT_16s0013g00260	EnsemblPlantsGene:VIT_16s0013g00260	EnsemblPlants:VIT_16s0013g00260.t01	RefSeq:XP_002280522	RefSeq:XP_002280522.1	RefSeq:XP_010662223.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr16:+:5200379..5205994

Molecular Weight (calculated)

34836.1 Da

IEP (calculated)

5.299

GRAVY (calculated)

-0.582

Length

306 amino acids

Sequence
(BLAST)

001: MLATPAPVSL ASALLPAQGW KSSRSLLWRG KRRTCSRKGN SSLIIAKFEL KPPPYPLSAL EPHMSRETLE YHWGKHHRGY VDNLNRQIVG TELDGMTLED
101: IITITYNKGD LLPAFNNAAQ VWNHTSFWES MKPGGGGEPS GDLLELIKRD FGSFERFVEE FKLAASTQFG SGWAWLAYKA NRLDVGNAVN PRPSEEDKKL
201: VVVKSPNAIN PLLWDCNPLL TIDVWEHAYY LDFQNHRPDY ISIFMEKLVS WEAVSSRLEM AKAQVANRER EEERRKRAEE EEQMPYSEAV KMYLESDGDG
301: DDSEAE

Best Arabidopsis Sequence Match ( AT5G51100.1 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID
301: VSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.