Factsheet for Solyc03g095180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005670.2.1
Solyc02g021140.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc05g007420.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	Solyc05g007420.1.1	AT1G69690.1	21798944
AT5G51100.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc01g005670.2.1	AT4G10800.1	21798944
AT5G51100.1	Solyc02g021140.2.1	AT5G23310.1	18996978
AT5G51100.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT5G51100.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT5G51100.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT5G51100.1	Solyc06g072990.1.1	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	95.71	95.71
Solyc06g048410.2.1	Tomato	plastid	64.69	78.71
Solyc06g048420.1.1	Tomato	cytosol	39.27	74.38
CDY03380	Canola	cytosol	49.84	72.6
Bra013863.1-P	Field mustard	cytosol	50.49	72.17
CDY34342	Canola	cytosol	50.49	71.83
AT4G25100.2	Thale cress	plastid	49.51	70.75
CDY11055	Canola	cytosol	49.51	69.44
VIT_16s0013g00260.t01	Wine grape	plastid	69.97	69.28
KRH34597	Soybean	cytosol, nucleus	55.45	68.85
CDX92676	Canola	cytosol	48.51	68.06
KRG92190	Soybean	cytosol	53.47	65.32
Bra029190.1-P	Field mustard	mitochondrion	57.76	64.81
KRH70390	Soybean	plastid	62.38	60.19
CDY38848	Canola	plastid	59.08	59.87
CDY32644	Canola	plastid	59.08	59.67
KRH33343	Soybean	plastid	59.41	58.06
AT5G51100.1	Thale cress	plastid	58.42	58.03
GSMUA_Achr11P...	Banana	plastid	53.47	53.82
CDY05836	Canola	cytosol	34.65	48.61
Solyc02g021140.2.1	Tomato	nucleus	37.62	45.24
Bra035724.1-P	Field mustard	cytosol	31.68	43.44
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	27.39	36.4
Zm00001d045538_P001	Maize	plastid	44.22	34.72
TraesCS4A01G434000.1	Wheat	plastid	44.55	34.53
TraesCS7D01G043000.1	Wheat	plastid	44.55	34.44
Os06t0115400-01	Rice	plastid	43.56	33.76
KXG19156	Sorghum	plastid	43.56	33.67
TraesCS7A01G048600.1	Wheat	mitochondrion	43.23	33.33
HORVU7Hr1G008390.6	Barley	plastid	43.89	32.28
CDY70727	Canola	mitochondrion	20.79	22.58

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.9	Gene3D:2.40.500.20	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314
InterPro:IPR036324	UniProt:K4BIU3	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N
InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769
PANTHER:PTHR42769:SF8	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	EnsemblPlantsGene:Solyc03g095180.2	EnsemblPlants:Solyc03g095180.2.1
UniParc:UPI000276767E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:56148963..56151781

Molecular Weight (calculated)

34577.4 Da

IEP (calculated)

5.269

GRAVY (calculated)

-0.627

Length

303 amino acids

Sequence
(BLAST)

001: MAAATASATL FSPFLPSPGF HESCRSLNWR THKKQIASKA GTVKVTAKFE LNPPPYPMNA LEPHMSRTTF EYHWGKHHRA YVDNLNKQIV GTELDELTLE
101: DIILVTYNQG NLLPPFNNAA QAWNHQFFWE SMKPGGGGQP SGELLKLINR DFGSFEAFVK EFKAAAATQF GSGWAWLAYK ANRLDVGNAS NPHPSDEDKK
201: LVIVKTPNAI NPLVWDYSPL LTIDVWEHAY YLDFRNRRPD YISIFMEKLV SWEAVSSRLE AAQAQAAERE KEEERKKREE EEEYQDGNEV REMYVETTDS
301: EAD

Best Arabidopsis Sequence Match ( AT5G51100.1 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID
301: VSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.