CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89844
KRG99108
KRH16959
KRH45889
KRH53667
KRH56238
KRH62719
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	KRG99108	AT1G69690.1	21798944
AT5G51100.1	KRH45889	AT1G69690.1	21798944
AT5G51100.1	KRH16959	AT3G49580.1	21798944
AT5G51100.1	KRH53667	AT3G49580.1	21798944
AT5G51100.1	KRH64261	AT3G49580.1	21798944
AT5G51100.1	KRH56238	AT4G10800.1	21798944
AT5G51100.1	KRH62719	AT4G10800.1	21798944
AT5G51100.1	KRG89844	AT5G23310.1	18996978
AT5G51100.1	KRH16959	AT5G24660.1	21798944
AT5G51100.1	KRH53667	AT5G24660.1	21798944
AT5G51100.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34597	Soybean	cytosol, nucleus	89.11	90.57
Bra013863.1-P	Field mustard	cytosol	63.31	74.06
CDY03380	Canola	cytosol	62.1	74.04
CDY34342	Canola	cytosol	63.31	73.71
AT4G25100.2	Thale cress	plastid	61.69	72.17
CDY11055	Canola	cytosol	62.5	71.76
CDX92676	Canola	cytosol	62.5	71.76
Solyc06g048420.1.1	Tomato	cytosol	41.13	63.75
Solyc06g048410.2.1	Tomato	plastid	62.1	61.85
PGSC0003DMT400070920	Potato	extracellular, plastid	60.89	59.92
KRH70390	Soybean	plastid	72.98	57.64
KRH33343	Soybean	plastid	70.97	56.77
Bra029190.1-P	Field mustard	mitochondrion	59.27	54.44
VIT_16s0013g00260.t01	Wine grape	plastid	66.94	54.25
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	66.13	54.13
Solyc03g095180.2.1	Tomato	plastid	65.32	53.47
AT5G51100.1	Thale cress	plastid	61.29	49.84
CDY38848	Canola	plastid	59.68	49.5
CDY32644	Canola	plastid	59.68	49.33
GSMUA_Achr11P...	Banana	plastid	56.45	46.51
CDY05836	Canola	cytosol	31.45	36.11
KRG89844	Soybean	nucleus	42.34	34.43
Bra035724.1-P	Field mustard	cytosol	27.82	31.22
KRH64185	Soybean	mitochondrion	29.44	30.42
KRH53764	Soybean	mitochondrion	28.63	29.46
Zm00001d045538_P001	Maize	plastid	45.16	29.02
Os06t0115400-01	Rice	plastid	45.56	28.9
TraesCS7D01G043000.1	Wheat	plastid	43.95	27.81
TraesCS7A01G048600.1	Wheat	mitochondrion	43.95	27.74
TraesCS4A01G434000.1	Wheat	plastid	43.55	27.62
KXG19156	Sorghum	plastid	43.55	27.55
HORVU7Hr1G008390.6	Barley	plastid	43.15	25.97
CDY70727	Canola	mitochondrion	24.19	21.51

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.9	Gene3D:2.40.500.20	EntrezGene:547823	UniProt:A0A0R0EQT1
EnsemblPlantsGene:GLYMA_20G196900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430
GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	EnsemblPlants:KRG92190	ProteinID:KRG92190
ProteinID:KRG92190.1	EMBL:M64267	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N
InterPro:Mn/Fe_SOD_N_sf	UniProt:P28759	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703
ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF8	MetaCyc:PWY-6854	InterPro:SOD_C_sf	SUPFAM:SSF46609
SUPFAM:SSF54719	UniParc:UPI0000135BF1	:	:	:	:

Description

SODBhypothetical protein

Coordinates

chr20:+:43456207..43460506

Molecular Weight (calculated)

27843.1 Da

IEP (calculated)

5.678

GRAVY (calculated)

-0.312

Length

248 amino acids

Sequence
(BLAST)

001: MASLGGLQNV SGINFLIKEG PKVNAKFELK PPPYPLNGLE PVMSQQTLEF HWGKHHKTYV ENLKKQVVGT ELDGKSLEEI IVTSYNKGDI LPAFNNAAQV
101: WNHDFFWECM KPGGGGKPSG ELLELIERDF GSFVKFLDEF KAAAATQFGS GWAWLAYRAR KFDGENVANP PSPDEDNKLV VLKSPNAVNP LVWGGYYPLL
201: TIDVWEHAYY LDFQNRRPDY ISVFMDKLVS WDAVSSRLEQ AKALITSA

Best Arabidopsis Sequence Match ( AT4G25100.2 )
(BLAST)

001: MAASSAVTAN YVLKPPPFAL DALEPHMSKQ TLEFHWGKHH RAYVDNLKKQ VLGTELEGKP LEHIIHSTYN NGDLLPAFNN AAQAWNHEFF WESMKPGGGG
101: KPSGELLALL ERDFTSYEKF YEEFNAAAAT QFGAGWAWLA YSNEKLKVVK TPNAVNPLVL GSFPLLTIDV WEHAYYLDFQ NRRPDYIKTF MTNLVSWEAV
201: SARLEAAKAA SA

Arabidopsis Description

FSD1Superoxide dismutase [Fe] 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P21276]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.