CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

cytosol: 18757068
nucleus: 21132161
mitochondrion: 21766870
nucleus: 27291164
mitochondrion: 27780359
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 18757068 doi

NW Oehrle, AD Sarma, JK Waters, DW Emerich

United States Department of Agriculture, Curtis Hall, University of Missouri, Columbia, MO 65211, United States.

msms PMID: 21766870 doi

S Komatsu, A Yamamoto, T Nakamura, MZ Nouri, Y Nanjo, K Nishizawa, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53764	Soybean	mitochondrion	92.08	91.7
CDY36283	Canola	cytosol	63.33	84.44
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	75.0	78.95
PGSC0003DMT400042937	Potato	mitochondrion	74.17	78.07
AT3G10920.1	Thale cress	mitochondrion	74.17	77.06
Bra034154.1-P	Field mustard	mitochondrion	73.75	76.62
CDY08564	Canola	mitochondrion	72.92	75.76
CDY08566	Canola	mitochondrion	72.92	75.76
Bra029879.1-P	Field mustard	mitochondrion	72.5	75.32
EES17972	Sorghum	mitochondrion	72.92	75.11
CDY00976	Canola	mitochondrion	72.08	74.89
Os05t0323900-01	Rice	mitochondrion	72.08	74.89
Zm00001d037859_P002	Maize	mitochondrion	72.92	74.47
TraesCS2B01G567600.1	Wheat	mitochondrion	68.75	73.33
TraesCS2D01G538300.1	Wheat	mitochondrion	70.42	73.16
TraesCS2A01G537100.1	Wheat	mitochondrion	70.0	72.73
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	73.75	72.24
GSMUA_Achr3P09840_001	Banana	mitochondrion	71.67	71.37
Zm00001d009990_P001	Maize	mitochondrion	72.08	71.19
GSMUA_Achr8P21350_001	Banana	mitochondrion	70.42	71.01
GSMUA_Achr3P18000_001	Banana	mitochondrion	69.17	68.31
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	67.5	64.03
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	72.5	61.48
KRH34597	Soybean	cytosol, nucleus	30.83	30.33
KRG92190	Soybean	cytosol	30.42	29.44
KRH33343	Soybean	plastid	30.0	23.23
KRG89844	Soybean	nucleus	29.17	22.95
KRH70390	Soybean	plastid	30.0	22.93

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	EMBL:ACUP02002746	EnsemblPlantsGene:GLYMA_04G221300	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114
UniProt:I1JYA9	InterPro:IPR036314	InterPro:IPR036324	EnsemblPlants:KRH64185	ProteinID:KRH64185	ProteinID:KRH64185.1
InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081
PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6
MetaCyc:PWY-6854	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI00023C0B9C	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:49208595..49212350

Molecular Weight (calculated)

26548.7 Da

IEP (calculated)

9.094

GRAVY (calculated)

-0.282

Length

240 amino acids

Sequence
(BLAST)

001: MAARALLTRK TLATVLRNDA KPIIGAGIAA ATHSRGLHVY TLPDLDYDYG ALEPAISGEI MQLHHQKHHQ TYITNFNKAL EQLQDAVAKK DSSAVVKLQG
101: AIKFNGGGHV NHSIFWKNLA PVREGGGEPP KGSLGWAIDT HFGSFEALVQ KVNAEGAALQ GSGWVWLGLD KELKRLVVET TANQDPLVTK GPNLVPLLGI
201: DVWEHAYYLQ YKNVRPDYLK NIWKVINWKY ASEVYEKESS

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.