Factsheet for GSMUA_Achr3P09840_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	87.14	85.71
GSMUA_Achr8P21350_001	Banana	mitochondrion	81.74	82.77
GSMUA_Achr3P18000_001	Banana	mitochondrion	80.5	79.84
CDY36283	Canola	cytosol	58.92	78.89
Os05t0323900-01	Rice	mitochondrion	73.86	77.06
EES17972	Sorghum	mitochondrion	74.27	76.82
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	70.95	75.0
Zm00001d037859_P002	Maize	mitochondrion	73.03	74.89
TraesCS2A01G537100.1	Wheat	mitochondrion	71.78	74.89
TraesCS2B01G567600.1	Wheat	mitochondrion	69.71	74.67
TraesCS2D01G538300.1	Wheat	mitochondrion	70.95	74.03
Zm00001d009990_P001	Maize	mitochondrion	73.86	73.25
PGSC0003DMT400042937	Potato	mitochondrion	69.29	73.25
CDY00976	Canola	mitochondrion	69.71	72.73
AT3G10920.1	Thale cress	mitochondrion	69.29	72.29
Bra034154.1-P	Field mustard	mitochondrion	68.88	71.86
KRH64185	Soybean	mitochondrion	71.37	71.67
KRH53764	Soybean	mitochondrion	70.54	70.54
Bra029879.1-P	Field mustard	mitochondrion	67.22	70.13
CDY08564	Canola	mitochondrion	67.22	70.13
CDY08566	Canola	mitochondrion	67.22	70.13
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	68.46	65.22
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	67.63	57.6
GSMUA_Achr10P...	Banana	vacuole	25.31	27.11
GSMUA_Achr10P...	Banana	mitochondrion	25.73	26.05
GSMUA_Achr11P...	Banana	plastid	29.46	23.59

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784
GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr3G09840_001	EnsemblPlants:GSMUA_Achr3P09840_001
EnsemblPlants:GSMUA_Achr3T09840_001	InterPro:IPR036314	InterPro:IPR036324	UniProt:M0SDA1	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS
InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349
PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	InterPro:SOD_C_sf	SUPFAM:SSF46609
SUPFAM:SSF54719	UniParc:UPI000295CCC5	SEG:seg	:	:	:

Description

Superoxide dismutase [Mn] 3.1, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr3G09840_001]

Coordinates

chr3:+:7151508..7155153

Molecular Weight (calculated)

26112.0 Da

IEP (calculated)

7.040

GRAVY (calculated)

-0.259

Length

241 amino acids

Sequence
(BLAST)

001: MALRTLFTKK ALTRASGLGP LGAAAGDRGL GSGLGQARGL TAASLPDLPY DYGALEPAIS GEIMRLHHQR HHQAYVTNYN NALEQLEAAV AKGDAPAVVR
101: LQGAIKFNGG GHINHSIFWN NLKPEGGGEP PHSALGWAID TDFGSLEALV QKMNAEGAAL QGSGWVWLAL DKGSKKLSVE TTANQDPLVT KGLHMVPLLG
201: IDVWEHAYYL QYKNVRPDYL KNIWDVINWK YASEVYEKET A

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.