Factsheet for HORVU2Hr1G117740.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G537100.1	Wheat	mitochondrion	81.42	89.18
TraesCS2D01G538300.1	Wheat	mitochondrion	80.24	87.88
TraesCS2B01G567600.1	Wheat	mitochondrion	77.87	87.56
EES17972	Sorghum	mitochondrion	74.31	80.69
Os05t0323900-01	Rice	mitochondrion	73.12	80.09
Zm00001d037859_P002	Maize	mitochondrion	73.91	79.57
Zm00001d009990_P001	Maize	mitochondrion	74.7	77.78
CDY36283	Canola	cytosol	54.94	77.22
AT3G10920.1	Thale cress	mitochondrion	65.61	71.86
PGSC0003DMT400042937	Potato	mitochondrion	63.24	70.18
Bra034154.1-P	Field mustard	mitochondrion	64.03	70.13
Bra029879.1-P	Field mustard	mitochondrion	63.64	69.7
CDY08566	Canola	mitochondrion	63.64	69.7
CDY08564	Canola	mitochondrion	63.64	69.7
CDY00976	Canola	mitochondrion	63.64	69.7
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	62.45	69.3
GSMUA_Achr3P09840_001	Banana	mitochondrion	65.22	68.46
KRH64185	Soybean	mitochondrion	64.03	67.5
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	65.22	67.35
GSMUA_Achr8P21350_001	Banana	mitochondrion	63.24	67.23
KRH53764	Soybean	mitochondrion	63.24	66.39
GSMUA_Achr3P18000_001	Banana	mitochondrion	63.64	66.26
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	64.03	57.24
HORVU7Hr1G020590.12	Barley	cytosol, plastid	27.27	20.35
HORVU7Hr1G008390.6	Barley	plastid	27.27	16.75

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	UniProt:A0A287JL94	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006801	GO:GO:0006950	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010043	GO:GO:0016491
GO:GO:0019430	GO:GO:0042742	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:HORVU2Hr1G117740	EnsemblPlants:HORVU2Hr1G117740.2
InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N
InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088
PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI000B46DBF6
SEG:seg	:	:	:	:	:

Description

Superoxide dismutase [Source:UniProtKB/TrEMBL;Acc:A0A287JL94]

Coordinates

chrchr2H:-:740889789..740894825

Molecular Weight (calculated)

27788.1 Da

IEP (calculated)

9.063

GRAVY (calculated)

-0.406

Length

253 amino acids

Sequence
(BLAST)

001: GIQIRPSHSP NPPRVHTHTP ETKTQPAMAL STLATKRTLG LALGGARRGV ATFTLPDLPY DYGALEPAVS GEIMRLHHQK HHATYVANYN KALEQLDAAV
101: GKGDASGVVH LQSAIKFNGG GHVNHSIFWK NLKPISEGGG EPPHGKLGWA IDEDFGSIEK LIKKMNAEGA ALQGSGWVWL ALDKEAKKLS VETTPNQDPL
201: VTKGANLYPL LGIDVWEHAY YLQYKNVRPD YLTNIWKVVN WKYAGEEYEK VLA

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.