Factsheet for HORVU7Hr1G020590.12

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G084020.2
HORVU7Hr1G008390.6
HORVU7Hr1G020590.12

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	HORVU3Hr1G084020.2	AT3G54290.1	21798944
AT5G23310.1	HORVU7Hr1G020590.12	AT5G23310.1	18996978
AT5G23310.1	HORVU7Hr1G008390.6	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	69.32	90.38
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	69.32	90.38
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	66.96	86.97
Os06t0143000-01	Rice	plastid	56.34	74.9
KXG19271	Sorghum	plastid	57.23	74.33
Zm00001d045384_P003	Maize	mitochondrion	42.77	72.14
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	38.94	70.97
GSMUA_Achr10P...	Banana	vacuole	46.02	69.33
Zm00001d014632_P001	Maize	mitochondrion	30.97	68.18
GSMUA_Achr10P...	Banana	mitochondrion	46.61	66.39
Zm00001d036135_P003	Maize	mitochondrion, plastid	54.87	65.49
CDX88013	Canola	plastid	46.61	59.85
AT5G23310.1	Thale cress	plastid	46.02	59.32
CDY45763	Canola	plastid	46.02	59.32
Bra009670.1-P	Field mustard	plastid	46.02	59.32
Bra026503.1-P	Field mustard	plastid	46.02	59.32
CDX87176	Canola	plastid	45.43	59.23
CDY16845	Canola	plastid	45.72	58.94
Solyc02g021140.2.1	Tomato	nucleus	41.59	55.95
PGSC0003DMT400046236	Potato	plastid	41.59	54.65
KRG89844	Soybean	nucleus	44.84	49.84
VIT_10s0042g00100.t01	Wine grape	mitochondrion	45.43	47.98
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	20.35	27.27
HORVU7Hr1G008390.6	Barley	plastid	28.61	23.54

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	Gene3D:2.40.500.20	UniProt:A0A287VM26	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009295	GO:GO:0009507
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0019430	GO:GO:0042644	GO:GO:0042646
GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:HORVU7Hr1G020590	EnsemblPlants:HORVU7Hr1G020590.12	InterPro:IPR036314	InterPro:IPR036324
InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777
PRINTS:PR01703	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719
UniParc:UPI000B46D04E	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr7H:-:27773450..27777772

Molecular Weight (calculated)

38106.6 Da

IEP (calculated)

7.865

GRAVY (calculated)

-0.283

Length

339 amino acids

Sequence
(BLAST)

001: VHISSAQSVG RHCENDKVLD QPSPAPSSLS FLAAHRHPAL RSSSPPLAGA VTTMLLQMRG LPAAPHHPLA HPHISPAPPP SLIGARRRRP SRRLSKVVSY
101: YGLTTPPYKT DALEPYMSRR AVELHWGKHQ QEHVDGLNKQ LAISPLYGHT LEDLIKDAYN NGNPLPEHNA AAEVWNHHFF WESMQPEGGG SPEAGVLQQI
201: EKDFGSFVNF REEFMRSALS LLGSGWVWLV LKRSERKLAV VHTLNAINPL AFGDIPIISL DLWEVRKLDL CFDPIVCQLR GTDIPLFPFQ HAYYLDYKDD
301: RRTYVSNFLD HLVSWHTVTL RMMRAEAFVN LGEPNIPVA

Best Arabidopsis Sequence Match ( AT4G25100.1 )
(BLAST)

001: MAASSAVTAN YVLKPPPFAL DALEPHMSKQ TLEFHWGKHH RAYVDNLKKQ VLGTELEGKP LEHIIHSTYN NGDLLPAFNN AAQAWNHEFF WESMKPGGGG
101: KPSGELLALL ERDFTSYEKF YEEFNAAAAT QFGAGWAWLA YSNEKLKVVK TPNAVNPLVL GSFPLLTIDV WEHAYYLDFQ NRRPDYIKTF MTNLVSWEAV
201: SARLEAAKAA SA

Arabidopsis Description

FSD1Superoxide dismutase [Fe] 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P21276]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.