Factsheet for TraesCS7D01G086400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G374300.1
TraesCS4A01G390300.1
TraesCS4A01G434000.1
TraesCS7A01G048600.1
TraesCS7A01G090400.1
TraesCS7D01G043000.1
TraesCS7D01G086400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	TraesCS3A01G374300.1	AT3G54290.1	21798944
AT5G23310.1	TraesCS4A01G390300.1	AT5G23310.1	18996978
AT5G23310.1	TraesCS7A01G090400.1	AT5G23310.1	18996978
AT5G23310.1	TraesCS7D01G086400.1	AT5G23310.1	18996978
AT5G23310.1	TraesCS4A01G434000.1	AT5G51100.1	18996978
AT5G23310.1	TraesCS7A01G048600.1	AT5G51100.1	18996978
AT5G23310.1	TraesCS7D01G043000.1	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	96.54	96.54
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	93.46	93.1
KXG19271	Sorghum	plastid	76.92	76.63
Os06t0143000-01	Rice	plastid	73.85	75.29
Zm00001d045384_P003	Maize	mitochondrion	56.15	72.64
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	51.92	72.58
GSMUA_Achr10P...	Banana	vacuole	60.38	69.78
HORVU7Hr1G020590.12	Barley	cytosol, plastid	90.38	69.32
Zm00001d014632_P001	Maize	mitochondrion	40.0	67.53
GSMUA_Achr10P...	Banana	mitochondrion	61.15	66.81
Zm00001d036135_P003	Maize	mitochondrion, plastid	71.15	65.14
CDY16845	Canola	plastid	60.0	59.32
Bra026503.1-P	Field mustard	plastid	60.0	59.32
CDY45763	Canola	plastid	59.62	58.94
AT5G23310.1	Thale cress	plastid	59.62	58.94
CDX88013	Canola	plastid	59.62	58.71
Bra009670.1-P	Field mustard	plastid	59.23	58.56
CDX87176	Canola	plastid	58.46	58.46
Solyc02g021140.2.1	Tomato	nucleus	53.85	55.56
PGSC0003DMT400046236	Potato	plastid	53.08	53.49
KRG89844	Soybean	nucleus	58.85	50.16
VIT_10s0042g00100.t01	Wine grape	mitochondrion	56.92	46.11
TraesCS2D01G538300.1	Wheat	mitochondrion	26.54	29.87
TraesCS7D01G043000.1	Wheat	plastid	36.15	23.98

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.4	Gene3D:2.40.500.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009295	GO:GO:0009507
GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0042644	GO:GO:0042646	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C
InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703
ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719
EnsemblPlantsGene:TraesCS7D01G086400	EnsemblPlants:TraesCS7D01G086400.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:+:53263870..53265248

Molecular Weight (calculated)

29841.6 Da

IEP (calculated)

7.497

GRAVY (calculated)

-0.432

Length

260 amino acids

Sequence
(BLAST)

001: MLLPVRGLPA APHRPLTHPH SSPAPPPSLL GARRRRPSRR LSKVVSYYGL TTPPYKTDAL EPYMSRRAVE LHWGKHQQEY VDGLNRQLAI SPLYGHTLED
101: LIKEAYNNGN PLPEYNDAAE VWNHHFFWES MQPEGGGSPE AGVLQQIEKD FGSFFNFREE FMRSALSLLG SGWVWLVLKR SERKLEVVHT RNAINPLAFG
201: DIPIISLDLW EHAYYLDYKD DRRTYVSNFL DHLVSWHTVT VRMMRAEAFV NLGEPTIPVA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.