CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01796
KXG19156
KXG19271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	EES01796	AT3G54290.1	21798944
AT5G23310.1	KXG19271	AT5G23310.1	18996978
AT5G23310.1	KXG19156	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0143000-01	Rice	plastid	81.99	83.92
Zm00001d045384_P003	Maize	mitochondrion	62.84	81.59
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	77.78	78.08
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	76.63	76.92
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	76.63	76.63
GSMUA_Achr10P...	Banana	vacuole	61.69	71.56
GSMUA_Achr10P...	Banana	mitochondrion	62.45	68.49
CDX87176	Canola	plastid	61.3	61.54
CDY16845	Canola	plastid	61.3	60.84
Bra026503.1-P	Field mustard	plastid	60.92	60.46
CDY45763	Canola	plastid	60.92	60.46
CDX88013	Canola	plastid	60.54	59.85
Bra009670.1-P	Field mustard	plastid	60.15	59.7
AT5G23310.1	Thale cress	plastid	59.77	59.32
Solyc02g021140.2.1	Tomato	nucleus	55.94	57.94
HORVU7Hr1G020590.12	Barley	cytosol, plastid	74.33	57.23
PGSC0003DMT400046236	Potato	plastid	55.56	56.2
KRG89844	Soybean	nucleus	59.0	50.49
VIT_10s0042g00100.t01	Wine grape	mitochondrion	59.39	48.29
EES17972	Sorghum	mitochondrion	27.2	30.47
KXG19156	Sorghum	plastid	35.63	23.72

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.4	Gene3D:2.40.500.20	EntrezGene:8068761	UniProt:A0A194YI44
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009295	GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0019430
GO:GO:0042644	GO:GO:0042646	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324
EnsemblPlants:KXG19271	ProteinID:KXG19271	ProteinID:KXG19271.1	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C
InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703
ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	MetaCyc:PWY-6854	InterPro:SOD_C_sf	EnsemblPlantsGene:SORBI_3010G033000
SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0003C6A3A9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:2618404..2621858

Molecular Weight (calculated)

29964.8 Da

IEP (calculated)

7.967

GRAVY (calculated)

-0.362

Length

261 amino acids

Sequence
(BLAST)

001: MAASALHLRL LPSPPASVKL QQRQLRSLSP RIQRQGGLSR RFSKVVSYYG LTTPPYKLDA LEPYMSKRTV ELHWGKHHQD YVDGLNKQLA TSPLYGYTLE
101: DLIKEAYNNG NPLPEYNNAA QVWNHHFFWE SMQPEGGGVP VGGVLQQIEK DFGSFTNFRE EFIRSALQLL GSGWVWLVLK RNERKLSVVH TRNAISPLAF
201: GDIPIISLDL WEHAYYLDYK DDRLAYITNF MDHLISWDTV TLRMMRAESF VNLGEPTIPE A

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.