Factsheet for Os06t0143000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 17189339
nucleus: 19621931

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0861700-00
Os06t0115400-01
Os06t0143000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	Os01t0861700-00	AT3G54290.1	21798944
AT5G23310.1	Os06t0143000-01	AT5G23310.1	18996978
AT5G23310.1	Os06t0115400-01	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19271	Sorghum	plastid	83.92	81.99
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	76.47	75.0
Zm00001d045384_P003	Maize	mitochondrion	58.82	74.63
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	75.69	73.95
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	75.29	73.85
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	50.98	69.89
Zm00001d014632_P001	Maize	mitochondrion	41.57	68.83
GSMUA_Achr10P...	Banana	vacuole	60.0	68.0
Zm00001d036135_P003	Maize	mitochondrion, plastid	75.29	67.61
GSMUA_Achr10P...	Banana	mitochondrion	61.18	65.55
CDX87176	Canola	plastid	60.78	59.62
CDY16845	Canola	plastid	61.18	59.32
CDY45763	Canola	plastid	61.18	59.32
CDX88013	Canola	plastid	61.18	59.09
Bra026503.1-P	Field mustard	plastid	60.78	58.94
Bra009670.1-P	Field mustard	plastid	60.39	58.56
AT5G23310.1	Thale cress	plastid	60.39	58.56
Solyc02g021140.2.1	Tomato	nucleus	57.65	58.33
HORVU7Hr1G020590.12	Barley	cytosol, plastid	74.9	56.34
PGSC0003DMT400046236	Potato	plastid	56.86	56.2
KRG89844	Soybean	nucleus	59.61	49.84
VIT_10s0042g00100.t01	Wine grape	mitochondrion	58.04	46.11
Os05t0323900-01	Rice	mitochondrion	28.63	31.6
Os06t0115400-01	Rice	plastid	38.82	25.32

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.4	Gene3D:2.40.500.20	EntrezGene:4340091	EMBL:AB014056
EMBL:AK062073	EMBL:AK071301	ProteinID:BAD67658.1	ProteinID:BAF18688.1	ProteinID:BAS96109.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009295
GO:GO:0009507	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0019430	GO:GO:0042644	GO:GO:0042646	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N
InterPro:Mn/Fe_SOD_N_sf	EnsemblPlantsGene:Os06g0143000	EnsemblPlants:Os06t0143000-01	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349
PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	UniProt:Q5VSB7	InterPro:SOD_C_sf
SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0000457C2D	RefSeq:XP_015642495.1	RefSeq:XP_015642496.1	:

Description

SUPEROXIDE DISMUTASE BIron-superoxide dismutase (EC 1.15.1.1). (Os06t0143000-01)

Coordinates

chr6:+:2256869..2260898

Molecular Weight (calculated)

29478.2 Da

IEP (calculated)

9.091

GRAVY (calculated)

-0.413

Length

255 amino acids

Sequence
(BLAST)

001: MAAFASALRV LPSPPAAVPR RLRSREQRQG CRSRRYSKVV AYYALTTPPY KLDALEPYIS KRTVELHWGK HQQDYVDSLN KQLATSMFYG YTLEELIKEA
101: YNNGNPLPEY NNAAQVWNHH FFWESMQPEG GGSPGRGVLQ QIEKDFGSFT NFREEFIRSA LSLLGSGWVW LVLKRKERKF SVVHTQNAIS PLALGDIPLI
201: NLDLWEHAYY LDYKDDRRMY VTNFIDHLVS WDTVTLRMMR AEAFVNLGEP NIPVA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.