Factsheet for GSMUA_Achr10P27190_001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 2
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr3P22630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	GSMUA_Achr3P22630_001	AT3G54290.1	21798944
AT5G23310.1	GSMUA_Achr10P...	AT5G23310.1	18996978
AT5G23310.1	GSMUA_Achr10P...	AT5G23310.1	18996978
AT5G23310.1	GSMUA_Achr11P...	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	mitochondrion	94.67	89.5
KXG19271	Sorghum	plastid	71.56	61.69
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	50.67	61.29
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	70.22	60.77
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	70.22	60.54
CDX87176	Canola	plastid	69.78	60.38
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	69.78	60.38
Solyc02g021140.2.1	Tomato	nucleus	67.56	60.32
CDX88013	Canola	plastid	70.67	60.23
Os06t0143000-01	Rice	plastid	68.0	60.0
Bra009670.1-P	Field mustard	plastid	69.78	59.7
Bra026503.1-P	Field mustard	plastid	69.78	59.7
CDY16845	Canola	plastid	69.78	59.7
CDY45763	Canola	plastid	69.78	59.7
AT5G23310.1	Thale cress	plastid	69.78	59.7
Zm00001d045384_P003	Maize	mitochondrion	52.44	58.71
PGSC0003DMT400046236	Potato	plastid	66.22	57.75
Zm00001d014632_P001	Maize	mitochondrion	39.11	57.14
Zm00001d036135_P003	Maize	mitochondrion, plastid	66.67	52.82
KRG89844	Soybean	nucleus	67.11	49.51
VIT_10s0042g00100.t01	Wine grape	mitochondrion	69.33	48.6
HORVU7Hr1G020590.12	Barley	cytosol, plastid	69.33	46.02
GSMUA_Achr11P...	Banana	plastid	40.89	30.56
GSMUA_Achr3P09840_001	Banana	mitochondrion	27.11	25.31
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	27.11	24.9
GSMUA_Achr8P21350_001	Banana	mitochondrion	26.22	24.79
GSMUA_Achr3P18000_001	Banana	mitochondrion	26.67	24.69

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.4	Gene3D:2.40.500.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr10G27190_001
EnsemblPlants:GSMUA_Achr10P27190_001	EnsemblPlants:GSMUA_Achr10T27190_001	InterPro:IPR036314	InterPro:IPR036324	UniProt:M0RLU3	InterPro:Mn/Fe_SOD
InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777
PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	InterPro:SOD_C_sf
SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0002962D0F	:	:	:

Description

Superoxide dismutase [Fe], chloroplastic (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr10G27190_001]

Coordinates

chr10:+:30409227..30411477

Molecular Weight (calculated)

26067.0 Da

IEP (calculated)

5.821

GRAVY (calculated)

-0.240

Length

225 amino acids

Sequence
(BLAST)

001: MLFSVSFHVL AYYGLTNPPY KLDALEPYMS RRTLELHWGN IHRGYSDSLN KQLANSPLYG CTMEELIKTT FNNGNPLPEY NNAAEVWNHD FFWESMQPNG
101: GRLPWGGVLD QIEKDFGSFS NFRDEFVHSA MMLFGSGWVW LVLKTNERRL LIVRTSNALC PLVWGDIPII SLDMWEHAYY LDYKDDVSKY VNNFMDHLIS
201: WHSATTRMVR AEAFVNLGEP KIPVA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.