Factsheet for VIT_10s0042g00100.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_10s0042g00100.t01
VIT_13s0101g00520.t01
VIT_16s0013g00260.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	VIT_13s0101g00520.t01	AT3G54290.1	21798944
AT5G23310.1	VIT_10s0042g00100.t01	AT5G23310.1	18996978
AT5G23310.1	VIT_16s0013g00260.t01	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87176	Canola	plastid	56.7	70.0
Bra009670.1-P	Field mustard	plastid	57.01	69.58
CDY45763	Canola	plastid	57.01	69.58
GSMUA_Achr10P...	Banana	vacuole	48.6	69.33
CDX88013	Canola	plastid	57.01	69.32
AT5G23310.1	Thale cress	plastid	56.7	69.2
CDY16845	Canola	plastid	56.39	68.82
Bra026503.1-P	Field mustard	plastid	56.07	68.44
Solyc02g021140.2.1	Tomato	nucleus	53.58	68.25
PGSC0003DMT400046236	Potato	plastid	54.83	68.22
GSMUA_Achr10P...	Banana	mitochondrion	49.53	66.81
KRG89844	Soybean	nucleus	57.32	60.33
KXG19271	Sorghum	plastid	48.29	59.39
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	47.35	58.24
Os06t0143000-01	Rice	plastid	46.11	58.04
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	46.73	57.69
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	33.02	56.99
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	46.11	56.92
Zm00001d045384_P003	Maize	mitochondrion	35.51	56.72
Zm00001d014632_P001	Maize	mitochondrion	25.86	53.9
Zm00001d036135_P003	Maize	mitochondrion, plastid	45.48	51.41
HORVU7Hr1G020590.12	Barley	cytosol, plastid	47.98	45.43
VIT_16s0013g00260.t01	Wine grape	plastid	38.63	40.52
VIT_06s0004g07950.t01	Wine grape	mitochondrion	19.31	27.19
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	21.81	24.73

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	EntrezGene:100263457	wikigene:100263457	MapMan:15.6.1.2.2.4	Gene3D:2.40.500.20
ProteinID:CBI28995	ProteinID:CBI28995.3	UniProt:D7TES2	EMBL:FN595766	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324
EntrezGene:LOC100263457	wikigene:LOC100263457	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N
InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769
PANTHER:PTHR42769:SF7	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	TIGR:TC65836	UniParc:UPI0001BE309C
ArrayExpress:VIT_10s0042g00100	EnsemblPlantsGene:VIT_10s0042g00100	EnsemblPlants:VIT_10s0042g00100.t01	unigene:Vvi.8344	RefSeq:XP_002267399	RefSeq:XP_002267399.1
RefSeq:XP_002267399.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:12756628..12763527

Molecular Weight (calculated)

36880.2 Da

IEP (calculated)

8.650

GRAVY (calculated)

-0.506

Length

321 amino acids

Sequence
(BLAST)

001: MEKPCQIKSI PLSSFRAAKP EKKQNQHAPA PVRYTYKYRE IPLQRDVGLA VREEKEEMGY CCNNSFPASS HVLLTDLSQR WKCPKLQNLR HKGQFHGSQK
101: ASKVLAFYGL KAPPYKLDAL EPHMSRRTLE MHWGDHHRGY VEGLNKQLEK DDILYGHTLD ELVKVTYNNG NPLPEFNNAA QVWNHDFFWE SMQPGGGDMP
201: RLGLLEQIEK DFGSFTNFKE KFLEAALTLF GSGWVWLVLK RNERCLAVVK TSNAINPIVW DDIPIISLDV WEHAYYLDYK NDKGKYATVF MNHLVSWNAA
301: AARMARAEAF VNLGEPKIPI A

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.