CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67465
CDX73491
CDX76154
CDX78227
CDX87176
CDX88013
CDY05836
CDY13198
CDY16845
CDY32644
CDY38848
CDY45763
CDY67171
CDY70727

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	CDX73491	AT3G54290.1	21798944
AT5G23310.1	CDX76154	AT3G54290.1	21798944
AT5G23310.1	CDX78227	AT3G54290.1	21798944
AT5G23310.1	CDY13198	AT3G54290.1	21798944
AT5G23310.1	CDX87176	AT5G23310.1	18996978
AT5G23310.1	CDX88013	AT5G23310.1	18996978
AT5G23310.1	CDY16845	AT5G23310.1	18996978
AT5G23310.1	CDY45763	AT5G23310.1	18996978
AT5G23310.1	CDX67465	AT5G40590.1	21798944
AT5G23310.1	CDY67171	AT5G40590.1	21798944
AT5G23310.1	CDY05836	AT5G51100.1	18996978
AT5G23310.1	CDY32644	AT5G51100.1	18996978
AT5G23310.1	CDY38848	AT5G51100.1	18996978
AT5G23310.1	CDY70727	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009670.1-P	Field mustard	plastid	98.11	98.48
CDY16845	Canola	plastid	95.83	96.2
CDY45763	Canola	plastid	94.7	95.06
AT5G23310.1	Thale cress	plastid	93.18	93.54
CDX87176	Canola	plastid	89.02	90.38
GSMUA_Achr10P...	Banana	vacuole	60.23	70.67
GSMUA_Achr10P...	Banana	mitochondrion	60.98	67.65
Solyc02g021140.2.1	Tomato	nucleus	63.64	66.67
PGSC0003DMT400046236	Potato	plastid	62.12	63.57
Os06t0143000-01	Rice	plastid	59.09	61.18
Zm00001d045384_P003	Maize	mitochondrion	46.21	60.7
KXG19271	Sorghum	plastid	59.85	60.54
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	58.71	59.62
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	58.71	59.62
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	58.71	59.39
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	40.53	57.53
VIT_10s0042g00100.t01	Wine grape	mitochondrion	69.32	57.01
KRG89844	Soybean	nucleus	65.15	56.39
CDY03380	Canola	cytosol	43.94	55.77
CDY34342	Canola	cytosol	44.7	55.4
Zm00001d014632_P001	Maize	mitochondrion	31.82	54.55
CDX92676	Canola	cytosol	43.94	53.7
CDY11055	Canola	cytosol	43.56	53.24
Zm00001d036135_P003	Maize	mitochondrion, plastid	57.2	53.17
HORVU7Hr1G020590.12	Barley	cytosol, plastid	59.85	46.61
CDY38848	Canola	plastid	45.45	40.13
CDY32644	Canola	plastid	44.7	39.33
CDY27222	Canola	cytosol	26.89	31.28
CDY36283	Canola	cytosol	21.21	31.11
CDY00976	Canola	mitochondrion	26.52	30.3
CDY08564	Canola	mitochondrion	25.76	29.44
CDY08566	Canola	mitochondrion	25.76	29.44
CDX72144	Canola	endoplasmic reticulum	26.52	28.93
CDY05836	Canola	cytosol	21.59	26.39
CDY70727	Canola	mitochondrion	21.21	20.07

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.4	Gene3D:2.40.500.20	GO:A0A078DLC5	EnsemblPlants:CDX88013
ProteinID:CDX88013	ProteinID:CDX88013.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046872
GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00147418001	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS
InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349
PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	MetaCyc:PWY-6854	InterPro:SOD_C_sf
SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0004EE96A8	SEG:seg	:	:

Description

BnaA06g26040D

Coordinates

chrLK031854:+:113949..115580

Molecular Weight (calculated)

30214.8 Da

IEP (calculated)

8.193

GRAVY (calculated)

-0.510

Length

264 amino acids

Sequence
(BLAST)

001: MASSCVVTTS SFCTVSDSSI RLKSSKLVHL SNQQRRRSLG SRGGLKVEAY YGLKTPPYPL DALEPYMSQR TLEVHWGKHH RGYVDNLNKQ LGKDDKLYGY
101: TMEELIKATY NNGNPLPEFN NAAQVYNHDF FWESMQPGGG DMPQKGVLDQ IEKDFGSFTN FREKFTNAAL TQFGSGWVWL VLKREERRLE VVKTSNAINP
201: LVWDDIPIIS LDVWEHSYYL DYKNERGKYI NTFLNHLVSW NAAMSRMARA EAFVNLGEPN IPIA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.