Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028465.1-P | Field mustard | cytosol | 98.28 | 98.28 |
| CDX67465 | Canola | cytosol | 89.27 | 89.27 |
| AT5G40590.1 | Thale cress | nucleus | 83.69 | 83.33 |
| CDY30467 | Canola | nucleus | 68.67 | 65.57 |
| CDY23430 | Canola | nucleus | 66.95 | 62.9 |
| CDY17855 | Canola | nucleus | 63.95 | 61.57 |
| CDY22774 | Canola | mitochondrion | 39.48 | 53.18 |
| CDX95602 | Canola | nucleus | 54.08 | 52.07 |
| CDX83428 | Canola | nucleus | 53.65 | 51.87 |
| CDY30468 | Canola | nucleus | 52.79 | 49.8 |
| CDY23431 | Canola | nucleus | 52.36 | 49.39 |
| CDY23432 | Canola | mitochondrion, nucleus | 38.63 | 47.62 |
| CDY30469 | Canola | mitochondrion, nucleus | 39.48 | 47.18 |
| CDY71677 | Canola | mitochondrion, nucleus | 38.2 | 47.09 |
| CDY17853 | Canola | mitochondrion, nucleus, plastid | 33.05 | 42.08 |
| CDX79762 | Canola | nucleus, plastid | 33.91 | 38.54 |
| Solyc01g073850.1.1 | Tomato | cytosol | 17.17 | 36.04 |
| Solyc01g073860.2.1 | Tomato | cytosol | 32.19 | 31.78 |
| CDY71678 | Canola | plastid | 17.17 | 29.63 |
| PGSC0003DMT400016180 | Potato | cytosol | 19.31 | 27.78 |
| CDY42552 | Canola | mitochondrion | 26.18 | 26.87 |
| CDY35387 | Canola | cytosol | 27.47 | 23.53 |
| CDY22552 | Canola | cytosol | 27.04 | 23.16 |
| CDY30470 | Canola | cytosol, plastid | 25.75 | 14.71 |
| CDY04505 | Canola | plastid | 24.03 | 8.41 |
| CDX71437 | Canola | plastid | 23.18 | 8.16 |
Protein Annotations
| EnsemblPlants:CDY67171 | EnsemblPlantsGene:GSBRNA2T00059689001 | GO:A0A078JN17 | InterPro:DC1 | ncoils:Coil | PANTHER:PTHR13871 |
| PANTHER:PTHR13871:SF60 | PFAM:PF03107 | ProteinID:CDY67171 | ProteinID:CDY67171.1 | SEG:seg | SUPFAM:SSF57889 |
| UniParc:UPI0004EB03AC | UniProt:A0A078JN17 | MapMan:35.2 | : | : | : |
Description
BnaCnng53840DBnaCnng53840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JN17]
Coordinates
chrLK035829:-:1780..2481
Molecular Weight (calculated)
26188.0 Da
IEP (calculated)
6.492
GRAVY (calculated)
-0.481
Length
233 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSRQSVRHP SHNHPLRSHK CEAKDEIICS GCDLDLIGAA FKCTKSSECD YFLHKSCFSL PRETNHKSHQ PHCLTLLYSP KSMYTCQACG EYGSSFTYNC
101: SICQYDVHVG CVSMPETVKR EDHAHPLTLL YSSPYTEPGL VFTCDVCKET VPDNLWAYYC MECDYGTHLH SCAKEEEEAK KGEGEGSKSS AKQELAAMLE
201: AQREMENMQI EIHLAMQSAL FAKKANKAAL SYI
101: SICQYDVHVG CVSMPETVKR EDHAHPLTLL YSSPYTEPGL VFTCDVCKET VPDNLWAYYC MECDYGTHLH SCAKEEEEAK KGEGEGSKSS AKQELAAMLE
201: AQREMENMQI EIHLAMQSAL FAKKANKAAL SYI
001: MSSRQSVRHP SHNHPLRGHK CEAKDEIICS GCDLDLVGAA FKCTKSSDCD YFLHKSCFEL PRETNHKSHQ PHTLTLIYSP KSTYTCNACG EYGSSFTYNC
101: SICQYDVHVG CVSMPETVKR EDHPHPLTLL YGSPYNQPGL VSKCDVCEDI VPDNLWSYYC KECDYATHLH SCKKEEEAKK EDQKGEGSKN SMNSELAAML
201: EAQREVERMQ IEMHLAMQSA LISKKANKAA LNCI
101: SICQYDVHVG CVSMPETVKR EDHPHPLTLL YGSPYNQPGL VSKCDVCEDI VPDNLWSYYC KECDYATHLH SCKKEEEAKK EDQKGEGSKN SMNSELAAML
201: EAQREVERMQ IEMHLAMQSA LISKKANKAA LNCI
Arabidopsis Description
At5g40590 [Source:UniProtKB/TrEMBL;Acc:Q9FM39]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.