CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30467	Canola	nucleus	84.68	86.07
AT2G44370.1	Thale cress	mitochondrion	80.65	80.0
CDY17855	Canola	nucleus	70.56	72.31
CDX67465	Canola	cytosol	63.31	67.38
CDY67171	Canola	cytosol	62.9	66.95
AT2G17740.1	Thale cress	cytosol, mitochondrion, nucleus	64.92	64.92
CDX83428	Canola	nucleus	51.61	53.11
CDY22774	Canola	mitochondrion	36.69	52.6
CDX95602	Canola	nucleus	50.4	51.65
CDY23431	Canola	nucleus	51.21	51.42
CDY30468	Canola	nucleus	50.4	50.61
CDY30469	Canola	mitochondrion, nucleus	37.9	48.21
CDY23432	Canola	mitochondrion, nucleus	36.29	47.62
CDY71677	Canola	mitochondrion, nucleus	36.29	47.62
CDY17853	Canola	mitochondrion, nucleus, plastid	31.05	42.08
CDX79762	Canola	nucleus, plastid	32.26	39.02
Solyc01g073850.1.1	Tomato	cytosol	15.73	35.14
Solyc01g073860.2.1	Tomato	cytosol	32.66	34.32
CDY71678	Canola	plastid	17.74	32.59
CDY42552	Canola	mitochondrion	28.63	31.28
PGSC0003DMT400016180	Potato	cytosol	18.15	27.78
CDY22552	Canola	cytosol	27.82	25.37
CDY35387	Canola	cytosol	27.42	25.0
CDY30470	Canola	cytosol, plastid	25.0	15.2
CDY04505	Canola	plastid	23.79	8.86
CDX71437	Canola	plastid	22.98	8.61

Protein Annotations

EnsemblPlants:CDY23430	EnsemblPlantsGene:GSBRNA2T00022040001	GO:A0A078GAG3	InterPro:DC1	ncoils:Coil	PANTHER:PTHR13871
PANTHER:PTHR13871:SF60	PFAM:PF03107	ProteinID:CDY23430	ProteinID:CDY23430.1	SEG:seg	SUPFAM:SSF57889
UniParc:UPI0004EDCE6C	UniProt:A0A078GAG3	MapMan:35.2	:	:	:

Description

BnaC04g49580DBnaC04g49580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAG3]

Coordinates

chrLK032143:-:401198..401944

Molecular Weight (calculated)

27591.7 Da

IEP (calculated)

6.595

GRAVY (calculated)

-0.507

Length

248 amino acids

Sequence
(BLAST)

001: MASRKPSVRH PSHNHPLRGH KALAEEEIIC SGCDLDLIGA AFKCTKSECD YFLHKSCFDL PRETRHKSHP DHPLTLLYSP PYDSSTYECS ACSEYGSGFV
101: YNCSICHFDL HVGCISMPES VEREGHEHPL TLLYCSPYTN GLIFNCDVCQ ETVPDHLWSY YCKECDYGTH LHSCEVEEEV EPKRGAGGGG GKASTSGNKG
201: GGRGSAASEL AAMLEAQREM ERMQIELHME MQRAKIAKKA RKACLKLI

Best Arabidopsis Sequence Match ( AT2G44370.1 )
(BLAST)

001: MAARKPSVRH PSHNHPLRSH KAQVEEEIIC SGCDLDLIGA AFKCTKSECD YFLHKSCFEL PRETRHKAHP DHPLILLYSP PYESTYTCDA CGEYGSGFTY
101: NCSICQYDVH VGCVSMPESV EREGHAHPLT LLYRSPYQNG LIFNCDVCQE TVPDNLWSYY CKECDYGTHL HSCAVEEEEA EEEEPKRGGG SARGNTKSGG
201: NKGGRGSAAS ELAAMLEAQR EMEKMQIELH MEMQRAKIAK KARKACLKLI

Arabidopsis Description

At2g44370 [Source:UniProtKB/TrEMBL;Acc:O64871]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.