Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71677 | Canola | mitochondrion, nucleus | 98.94 | 98.94 |
| CDY30469 | Canola | mitochondrion, nucleus | 95.77 | 92.82 |
| Bra037653.1-P | Field mustard | mitochondrion, nucleus | 83.6 | 61.96 |
| AT2G44390.1 | Thale cress | mitochondrion | 60.85 | 55.02 |
| CDY22774 | Canola | mitochondrion | 49.74 | 54.34 |
| AT2G44380.1 | Thale cress | mitochondrion, nucleus | 70.9 | 54.25 |
| CDY23431 | Canola | nucleus | 59.26 | 45.34 |
| CDX83428 | Canola | nucleus | 56.08 | 43.98 |
| CDX95602 | Canola | nucleus | 56.08 | 43.8 |
| CDY17853 | Canola | mitochondrion, nucleus, plastid | 42.33 | 43.72 |
| CDY30468 | Canola | nucleus | 53.97 | 41.3 |
| CDX79762 | Canola | nucleus, plastid | 43.92 | 40.49 |
| CDX67465 | Canola | cytosol | 48.68 | 39.48 |
| CDY67171 | Canola | cytosol | 47.62 | 38.63 |
| CDY17855 | Canola | nucleus | 49.21 | 38.43 |
| CDY23430 | Canola | nucleus | 47.62 | 36.29 |
| CDY30467 | Canola | nucleus | 46.56 | 36.07 |
| CDY71678 | Canola | plastid | 19.58 | 27.41 |
| CDY42552 | Canola | mitochondrion | 32.8 | 27.31 |
| Solyc01g073860.2.1 | Tomato | cytosol | 30.69 | 24.58 |
| PGSC0003DMT400016180 | Potato | cytosol | 20.11 | 23.46 |
| Solyc01g073850.1.1 | Tomato | cytosol | 13.76 | 23.42 |
| CDY22552 | Canola | cytosol | 26.45 | 18.38 |
| CDY35387 | Canola | cytosol | 25.93 | 18.01 |
| CDY30470 | Canola | cytosol, plastid | 23.81 | 11.03 |
| CDX71437 | Canola | plastid | 22.22 | 6.34 |
| CDY04505 | Canola | plastid | 22.22 | 6.31 |
Protein Annotations
| EnsemblPlants:CDY23432 | EnsemblPlantsGene:GSBRNA2T00022042001 | GO:A0A078GEA6 | InterPro:DC1 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 |
| PFAM:PF03107 | ProteinID:CDY23432 | ProteinID:CDY23432.1 | SEG:seg | SUPFAM:SSF57889 | UniParc:UPI0004EE2E08 |
| UniProt:A0A078GEA6 | MapMan:35.2 | : | : | : | : |
Description
BnaC04g49600DBnaC04g49600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEA6]
Coordinates
chrLK032143:-:404364..405113
Molecular Weight (calculated)
21267.1 Da
IEP (calculated)
7.523
GRAVY (calculated)
-0.729
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSKKPVNRP SVRHPSHNHQ LRIFKSQEGD EIICSGCELD LIGQAFKYHP LTLLHSPPYG HSYTCDACGQ YGSGFTYNCS ECQYDVHVGC AFIPETVKRE
101: DHDHPLTLVY NTPCKGREDG AMFIYHQPKK GGGEGGRGGG ESSSAAARMK SLMKAQDEMA ALQLEARIRK NTNDAILELW DEPKRRYYW
101: DHDHPLTLVY NTPCKGREDG AMFIYHQPKK GGGEGGRGGG ESSSAAARMK SLMKAQDEMA ALQLEARIRK NTNDAILELW DEPKRRYYW
001: MASKKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELD LTGQAFKCIN ETYTCDACGE YGSGFTYNCS ECQYDLHVGC AFIPETVERE DHEHPLTLLY
101: NTPCKGCEDG AMFICNVCEE DMSENLWVYY CKECDYGTHV HSCAVYEDDE PNNRGGEEGE AMSSAVSRMK SLMKAEDELA AVQLEARMKR DANNAILGLY
201: AEPKRRYYW
101: NTPCKGCEDG AMFICNVCEE DMSENLWVYY CKECDYGTHV HSCAVYEDDE PNNRGGEEGE AMSSAVSRMK SLMKAEDELA AVQLEARMKR DANNAILGLY
201: AEPKRRYYW
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:O64873]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.