Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17853 | Canola | mitochondrion, nucleus, plastid | 75.12 | 84.15 |
| Bra004828.1-P | Field mustard | nucleus | 77.07 | 62.45 |
| AT5G43520.1 | Thale cress | mitochondrion, nucleus | 67.32 | 55.2 |
| CDY22774 | Canola | mitochondrion | 45.37 | 53.76 |
| CDY71677 | Canola | mitochondrion, nucleus | 40.98 | 44.44 |
| CDY23432 | Canola | mitochondrion, nucleus | 40.49 | 43.92 |
| CDY30469 | Canola | mitochondrion, nucleus | 41.46 | 43.59 |
| CDX83428 | Canola | nucleus | 44.88 | 38.17 |
| CDX95602 | Canola | nucleus | 43.9 | 37.19 |
| CDY23431 | Canola | nucleus | 41.95 | 34.82 |
| CDX67465 | Canola | cytosol | 39.02 | 34.33 |
| CDY30468 | Canola | nucleus | 40.98 | 34.01 |
| CDY67171 | Canola | cytosol | 38.54 | 33.91 |
| CDY30467 | Canola | nucleus | 38.54 | 32.38 |
| CDY23430 | Canola | nucleus | 39.02 | 32.26 |
| CDY17855 | Canola | nucleus | 36.59 | 30.99 |
| Solyc01g073850.1.1 | Tomato | cytosol | 15.12 | 27.93 |
| PGSC0003DMT400016180 | Potato | cytosol | 21.95 | 27.78 |
| Solyc01g073860.2.1 | Tomato | cytosol | 23.9 | 20.76 |
| CDY71678 | Canola | plastid | 11.22 | 17.04 |
| CDY35387 | Canola | cytosol | 19.02 | 14.34 |
| CDY22552 | Canola | cytosol | 19.02 | 14.34 |
| CDY42552 | Canola | mitochondrion | 15.61 | 14.1 |
| CDY30470 | Canola | cytosol, plastid | 18.54 | 9.31 |
| CDY04505 | Canola | plastid | 16.59 | 5.11 |
| CDX71437 | Canola | plastid | 16.1 | 4.98 |
Protein Annotations
| EnsemblPlants:CDX79762 | EnsemblPlantsGene:GSBRNA2T00132590001 | GO:A0A078CSN5 | InterPro:DC1 | InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_PHD |
| ncoils:Coil | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | PFAM:PF03107 | ProteinID:CDX79762 | ProteinID:CDX79762.1 |
| ScanProsite:PS01359 | SEG:seg | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI0004EE65F0 | MapMan:35.2 |
Description
BnaA05g03940D
Coordinates
chrLK031819:-:32222..32977
Molecular Weight (calculated)
23182.8 Da
IEP (calculated)
4.483
GRAVY (calculated)
-0.644
Length
205 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRKPKAKP PKKTMRQFAL DASSSLPGKL SSAQSPIAIT YCTNDESFYT CNACDQYGSG FTFHCSNCKY NLHVGCASLP EAIEREDHEH PLTLLYCTSC
101: KGREDTTFIC SACDETVLED LWVYYCRECD YGTHVYSCAA YEDQESNEEE EEEAGEASTS PASRIKSLMK AQDEMAAMQL EARIMNDANE AALELWDQPK
201: RRYYW
101: KGREDTTFIC SACDETVLED LWVYYCRECD YGTHVYSCAA YEDQESNEEE EEEAGEASTS PASRIKSLMK AQDEMAAMQL EARIMNDANE AALELWDQPK
201: RRYYW
001: MGSGKTNRPS VRHPSHNHPL RVFNSKEEDE IICSGCEHDL IGQAFKCTKS ECDYFLHKSC FDLPGEIHHK SHTNHPLTLL HSPPNGLSTY TCDACGEYGS
101: AFTYHCSECK YHVHVGCAFV PENVKREDHE HPLTLLYNTP CKGRKDGVVF ICDVCEVDVS ENLWVYYCKE CDYGTHVHSC TTNEDNGPKK GGEEEGESSS
201: LSTSRIKSLM EAEKEMREMA IIHQLQLDAL DAAGSYVGSW EPRRKDYW
101: AFTYHCSECK YHVHVGCAFV PENVKREDHE HPLTLLYNTP CKGRKDGVVF ICDVCEVDVS ENLWVYYCKE CDYGTHVHSC TTNEDNGPKK GGEEEGESSS
201: LSTSRIKSLM EAEKEMREMA IIHQLQLDAL DAAGSYVGSW EPRRKDYW
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SL28]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.