Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17853 | Canola | mitochondrion, nucleus, plastid | 59.68 | 82.51 |
| AT5G43520.1 | Thale cress | mitochondrion, nucleus | 77.47 | 78.4 |
| CDX79762 | Canola | nucleus, plastid | 62.45 | 77.07 |
| Bra040653.1-P | Field mustard | mitochondrion | 58.89 | 64.22 |
| Bra037653.1-P | Field mustard | mitochondrion, nucleus | 61.66 | 61.18 |
| Bra000352.1-P | Field mustard | nucleus | 55.34 | 57.85 |
| Bra037654.1-P | Field mustard | nucleus | 55.73 | 57.09 |
| Bra028465.1-P | Field mustard | cytosol | 49.01 | 53.22 |
| Bra037655.1-P | Field mustard | nucleus | 50.99 | 52.87 |
| Bra004826.1-P | Field mustard | nucleus | 48.22 | 50.41 |
| Solyc01g073860.2.1 | Tomato | cytosol | 32.02 | 34.32 |
| Solyc01g073850.1.1 | Tomato | cytosol | 14.23 | 32.43 |
| PGSC0003DMT400016180 | Potato | cytosol | 19.37 | 30.25 |
| Bra000252.1-P | Field mustard | cytosol | 24.9 | 23.16 |
| Bra037652.1-P | Field mustard | cytosol, plastid | 22.53 | 14.0 |
| Bra012008.1-P | Field mustard | nucleus | 3.56 | 1.95 |
Protein Annotations
| EnsemblPlants:Bra004828.1 | EnsemblPlants:Bra004828.1-P | EnsemblPlantsGene:Bra004828 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:DC1 | InterPro:Znf_PHD | ncoils:Coil | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 | PFAM:PF03107 |
| SEG:seg | SMART:SM00249 | SUPFAM:SSF57889 | UniParc:UPI0002547D2A | UniProt:M4CKU2 | MapMan:35.2 |
Description
AT5G43520 (E=6e-114) | DC1 domain-containing protein
Coordinates
chrA05:+:1995264..1996025
Molecular Weight (calculated)
28957.4 Da
IEP (calculated)
4.706
GRAVY (calculated)
-0.788
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRKPKAKP VSRQSVRHQS HSHPLRVFKA KEDDETVCSG CELELTGQAF KCTKSDCDYL LHKSCFDLPG ETHHKSHKDH PLTLLYSPPD DESVYTCNAC
101: DQYGSGFTYH CSNCKYNLHV GCASLPETIL REDHEHPLTL LYCTSCKGRE DTTFICSACD ETVLEDLWVY YCRECDYGTH VYSCAAYEDQ ESNEEEEEEE
201: EEGEASTSPA SRIKSLMKAQ DEMAAMQLEA RIMNDANEAA LDLWDQPKRR YYW
101: DQYGSGFTYH CSNCKYNLHV GCASLPETIL REDHEHPLTL LYCTSCKGRE DTTFICSACD ETVLEDLWVY YCRECDYGTH VYSCAAYEDQ ESNEEEEEEE
201: EEGEASTSPA SRIKSLMKAQ DEMAAMQLEA RIMNDANEAA LDLWDQPKRR YYW
001: MASRKPKAKP VNRQSVRHPS HNHPLRVFKA KEEDETACSG CELELTGQAF KCIKSECDYF LHKSCFDLPS ETNNKSHQDH PLTLLHSPPD DRSVYTCDAC
101: DQYGSGFSYH CSNCNYSLHV GCAFIPETVD REDHEHPLTL LYCTPCKGRE DTYFTCSACD ETISEDLWMY YCKDCDYGTH LHSCAAYEDQ GKEEEDEDEE
201: GEASSPASRI KSLMKAQDEM AAMQLEARIE NDARNAALDL WDEPKRRYYW
101: DQYGSGFSYH CSNCNYSLHV GCAFIPETVD REDHEHPLTL LYCTPCKGRE DTYFTCSACD ETISEDLWMY YCKDCDYGTH LHSCAAYEDQ GKEEEDEDEE
201: GEASSPASRI KSLMKAQDEM AAMQLEARIE NDARNAALDL WDEPKRRYYW
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FIY8]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.