Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79762 | Canola | nucleus, plastid | 84.15 | 75.12 |
| Bra004828.1-P | Field mustard | nucleus | 82.51 | 59.68 |
| CDY22774 | Canola | mitochondrion | 51.91 | 54.91 |
| AT5G43520.1 | Thale cress | mitochondrion, nucleus | 72.68 | 53.2 |
| CDY71677 | Canola | mitochondrion, nucleus | 44.26 | 42.86 |
| CDY23432 | Canola | mitochondrion, nucleus | 43.72 | 42.33 |
| CDY30469 | Canola | mitochondrion, nucleus | 44.26 | 41.54 |
| CDX95602 | Canola | nucleus | 46.99 | 35.54 |
| CDX83428 | Canola | nucleus | 46.45 | 35.27 |
| CDY23431 | Canola | nucleus | 46.45 | 34.41 |
| CDX67465 | Canola | cytosol | 43.17 | 33.91 |
| CDY30468 | Canola | nucleus | 45.36 | 33.6 |
| CDY67171 | Canola | cytosol | 42.08 | 33.05 |
| CDY23430 | Canola | nucleus | 42.08 | 31.05 |
| CDY30467 | Canola | nucleus | 40.98 | 30.74 |
| Solyc01g073850.1.1 | Tomato | cytosol | 18.03 | 29.73 |
| CDY17855 | Canola | nucleus | 38.25 | 28.93 |
| PGSC0003DMT400016180 | Potato | cytosol | 25.14 | 28.4 |
| Solyc01g073860.2.1 | Tomato | cytosol | 24.59 | 19.07 |
| CDY71678 | Canola | plastid | 10.93 | 14.81 |
| CDY22552 | Canola | cytosol | 21.31 | 14.34 |
| CDY35387 | Canola | cytosol | 20.77 | 13.97 |
| CDY42552 | Canola | mitochondrion | 15.85 | 12.78 |
| CDY30470 | Canola | cytosol, plastid | 20.22 | 9.07 |
| CDY04505 | Canola | plastid | 17.49 | 4.8 |
| CDX71437 | Canola | plastid | 16.39 | 4.53 |
Protein Annotations
| EnsemblPlants:CDY17853 | EnsemblPlantsGene:GSBRNA2T00002185001 | GO:A0A078FZP9 | InterPro:DC1 | ncoils:Coil | PANTHER:PTHR13871 |
| PANTHER:PTHR13871:SF60 | PFAM:PF03107 | ProteinID:CDY17853 | ProteinID:CDY17853.1 | SEG:seg | SUPFAM:SSF57889 |
| UniParc:UPI0004EF2310 | UniProt:A0A078FZP9 | MapMan:35.2 | : | : | : |
Description
BnaC04g03660DBnaC04g03660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZP9]
Coordinates
chrLK032079:-:63846..64592
Molecular Weight (calculated)
20777.0 Da
IEP (calculated)
4.362
GRAVY (calculated)
-0.573
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRKPKAKA LSSAQSPIAI TYCTNDESVY TCNACDQYGS GFTYHCSNCK YNLHVGCASL PETVEREDHE HPLILLYCTS CKGREDTAFI CSVCEETVLE
101: DLWVYYCREC DYGTHVYSCA AYEDQESNEE EEGEASTSPA SRIKSLMKAQ DEMAAMQLEA RIMNDANEAA LDLWDQPKRR YYW
101: DLWVYYCREC DYGTHVYSCA AYEDQESNEE EEGEASTSPA SRIKSLMKAQ DEMAAMQLEA RIMNDANEAA LDLWDQPKRR YYW
001: MGSGKTNRPS VRHPSHNHPL RVFNSKEEDE IICSGCEHDL IGQAFKCTKS ECDYFLHKSC FDLPGEIHHK SHTNHPLTLL HSPPNGLSTY TCDACGEYGS
101: AFTYHCSECK YHVHVGCAFV PENVKREDHE HPLTLLYNTP CKGRKDGVVF ICDVCEVDVS ENLWVYYCKE CDYGTHVHSC TTNEDNGPKK GGEEEGESSS
201: LSTSRIKSLM EAEKEMREMA IIHQLQLDAL DAAGSYVGSW EPRRKDYW
101: AFTYHCSECK YHVHVGCAFV PENVKREDHE HPLTLLYNTP CKGRKDGVVF ICDVCEVDVS ENLWVYYCKE CDYGTHVHSC TTNEDNGPKK GGEEEGESSS
201: LSTSRIKSLM EAEKEMREMA IIHQLQLDAL DAAGSYVGSW EPRRKDYW
Arabidopsis Description
Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9SL28]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.