Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra000352.1-P | Field mustard | nucleus | 97.1 | 96.69 |
| CDX95602 | Canola | nucleus | 90.04 | 89.67 |
| CDY30468 | Canola | nucleus | 57.68 | 56.28 |
| CDY23431 | Canola | nucleus | 57.68 | 56.28 |
| CDY71677 | Canola | mitochondrion, nucleus | 43.98 | 56.08 |
| CDY23432 | Canola | mitochondrion, nucleus | 43.98 | 56.08 |
| CDY22774 | Canola | mitochondrion | 39.42 | 54.91 |
| CDX67465 | Canola | cytosol | 51.87 | 53.65 |
| CDY67171 | Canola | cytosol | 51.87 | 53.65 |
| CDY30469 | Canola | mitochondrion, nucleus | 43.15 | 53.33 |
| CDY23430 | Canola | nucleus | 53.11 | 51.61 |
| CDY17855 | Canola | nucleus | 51.45 | 51.24 |
| CDY30467 | Canola | nucleus | 51.45 | 50.82 |
| CDY17853 | Canola | mitochondrion, nucleus, plastid | 35.27 | 46.45 |
| CDX79762 | Canola | nucleus, plastid | 38.17 | 44.88 |
| CDY71678 | Canola | plastid | 18.67 | 33.33 |
| Solyc01g073860.2.1 | Tomato | cytosol | 31.95 | 32.63 |
| CDY42552 | Canola | mitochondrion | 30.71 | 32.6 |
| Solyc01g073850.1.1 | Tomato | cytosol | 14.94 | 32.43 |
| PGSC0003DMT400016180 | Potato | cytosol | 16.6 | 24.69 |
| CDY22552 | Canola | cytosol | 26.97 | 23.9 |
| CDY35387 | Canola | cytosol | 26.56 | 23.53 |
| CDY30470 | Canola | cytosol, plastid | 24.9 | 14.71 |
| CDX71437 | Canola | plastid | 25.73 | 9.37 |
| CDY04505 | Canola | plastid | 25.73 | 9.31 |
Protein Annotations
| EnsemblPlants:CDX83428 | EnsemblPlantsGene:GSBRNA2T00139002001 | GO:A0A078D837 | InterPro:DC1 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 |
| PFAM:PF03107 | ProteinID:CDX83428 | ProteinID:CDX83428.1 | SEG:seg | SUPFAM:SSF57889 | UniParc:UPI0004EE654C |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA03g20780D
Coordinates
chrLK031832:+:1513658..1514383
Molecular Weight (calculated)
27643.7 Da
IEP (calculated)
6.587
GRAVY (calculated)
-0.573
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRKPVNRP SVKHPSHKHP LHIFKAQEGD EIICSGCELE LTGEAFKCTK SDCDYFLHKS CFDLPREINH KSHPNHPLTL LHSPPYESNA YGCDACGQYG
101: SSFIYHCSKC QYDVHVGCAF LPEILEREDH EHPLTLVFNS PCKGREGMVF MCDVCKETVS ENLWVYHCKV CDYGTHVHSC EVYENDEVKR GGGEEEAVLE
201: ALRMESLRNA RMELANMRIS NKINNSVIHF GDEPRYHWVR K
101: SSFIYHCSKC QYDVHVGCAF LPEILEREDH EHPLTLVFNS PCKGREGMVF MCDVCKETVS ENLWVYHCKV CDYGTHVHSC EVYENDEVKR GGGEEEAVLE
201: ALRMESLRNA RMELANMRIS NKINNSVIHF GDEPRYHWVR K
001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
Arabidopsis Description
At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.