Subcellular Localization
min:
: max
Winner_takes_all: nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23432 | Canola | mitochondrion, nucleus | 92.82 | 95.77 |
| CDY71677 | Canola | mitochondrion, nucleus | 91.79 | 94.71 |
| Bra037653.1-P | Field mustard | mitochondrion, nucleus | 83.59 | 63.92 |
| AT2G44390.1 | Thale cress | mitochondrion | 59.49 | 55.5 |
| AT2G44380.1 | Thale cress | mitochondrion, nucleus | 70.26 | 55.47 |
| CDY22774 | Canola | mitochondrion | 48.72 | 54.91 |
| CDY23431 | Canola | nucleus | 57.44 | 45.34 |
| CDY17853 | Canola | mitochondrion, nucleus, plastid | 41.54 | 44.26 |
| CDX95602 | Canola | nucleus | 54.36 | 43.8 |
| CDX83428 | Canola | nucleus | 53.33 | 43.15 |
| CDY30468 | Canola | nucleus | 52.82 | 41.7 |
| CDX79762 | Canola | nucleus, plastid | 43.59 | 41.46 |
| CDX67465 | Canola | cytosol | 48.21 | 40.34 |
| CDY17855 | Canola | nucleus | 49.23 | 39.67 |
| CDY67171 | Canola | cytosol | 47.18 | 39.48 |
| CDY23430 | Canola | nucleus | 48.21 | 37.9 |
| CDY30467 | Canola | nucleus | 46.67 | 37.3 |
| CDY42552 | Canola | mitochondrion | 32.82 | 28.19 |
| CDY71678 | Canola | plastid | 19.49 | 28.15 |
| Solyc01g073860.2.1 | Tomato | cytosol | 29.74 | 24.58 |
| PGSC0003DMT400016180 | Potato | cytosol | 20.0 | 24.07 |
| Solyc01g073850.1.1 | Tomato | cytosol | 13.33 | 23.42 |
| CDY22552 | Canola | cytosol | 27.18 | 19.49 |
| CDY35387 | Canola | cytosol | 26.67 | 19.12 |
| CDY30470 | Canola | cytosol, plastid | 23.59 | 11.27 |
| CDX71437 | Canola | plastid | 23.08 | 6.8 |
| CDY04505 | Canola | plastid | 23.08 | 6.76 |
Protein Annotations
| EnsemblPlants:CDY30469 | EnsemblPlantsGene:GSBRNA2T00045174001 | GO:A0A078GZ97 | InterPro:DC1 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 |
| PFAM:PF03107 | ProteinID:CDY30469 | ProteinID:CDY30469.1 | SEG:seg | SUPFAM:SSF57889 | UniParc:UPI0004EEADF5 |
| UniProt:A0A078GZ97 | MapMan:35.2 | : | : | : | : |
Description
BnaA04g25700DBnaA04g25700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZ97]
Coordinates
chrLK032253:-:373951..374718
Molecular Weight (calculated)
21722.6 Da
IEP (calculated)
7.031
GRAVY (calculated)
-0.744
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSKKPVNRP SVRHPSHNHP LRLFKSQEED EIICSGCELD LIGQAFKYHP LTLLHSPPYG HSYTCDACGQ YGSGFTYNCS ECQYDVHVGC AFIPETVKRE
101: DHDHPLTLVY NTPCKGREDG AMFIYHQPKK GGGGGEEGRG GGGGGGESSS AAARMKSLMK AQDEMAALQL EARIRKNTND AILELWDEPK RRYYW
101: DHDHPLTLVY NTPCKGREDG AMFIYHQPKK GGGGGEEGRG GGGGGGESSS AAARMKSLMK AQDEMAALQL EARIRKNTND AILELWDEPK RRYYW
001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
Arabidopsis Description
At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.