Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G44390.1 | Thale cress | mitochondrion | 71.66 | 84.69 |
| Bra037653.1-P | Field mustard | mitochondrion, nucleus | 84.21 | 81.57 |
| Bra040653.1-P | Field mustard | mitochondrion | 71.26 | 75.86 |
| CDY22774 | Canola | mitochondrion | 50.61 | 72.25 |
| CDY71677 | Canola | mitochondrion, nucleus | 54.25 | 70.9 |
| CDY23432 | Canola | mitochondrion, nucleus | 54.25 | 70.9 |
| AT5G43520.1 | Thale cress | mitochondrion, nucleus | 71.66 | 70.8 |
| CDY30469 | Canola | mitochondrion, nucleus | 55.47 | 70.26 |
| AT2G28270.1 | Thale cress | nucleus | 63.16 | 62.9 |
| AT2G44370.1 | Thale cress | mitochondrion | 56.28 | 55.6 |
| AT5G40590.1 | Thale cress | nucleus | 52.63 | 55.56 |
| AT2G17740.1 | Thale cress | cytosol, mitochondrion, nucleus | 52.63 | 52.42 |
| Solyc01g073850.1.1 | Tomato | cytosol | 16.19 | 36.04 |
| Solyc01g073860.2.1 | Tomato | cytosol | 32.79 | 34.32 |
| AT2G44400.1 | Thale cress | mitochondrion, nucleus, peroxisome, vacuole | 18.22 | 30.82 |
| PGSC0003DMT400016180 | Potato | cytosol | 19.43 | 29.63 |
| AT2G42060.1 | Thale cress | cytosol | 27.53 | 25.37 |
| AT2G27660.1 | Thale cress | plastid | 24.29 | 8.36 |
Protein Annotations
| MapMan:35.2 | EntrezGene:819045 | UniProt:A0A178VWA0 | ProteinID:AAC16105.1 | ProteinID:AEC10414.1 | EMBL:AK176732 |
| ArrayExpress:AT2G44380 | EnsemblPlantsGene:AT2G44380 | RefSeq:AT2G44380 | TAIR:AT2G44380 | RefSeq:AT2G44380-TAIR-G | EnsemblPlants:AT2G44380.1 |
| TAIR:AT2G44380.1 | EMBL:BT010647 | InterPro:DC1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0098869 | RefSeq:NP_181966.1 | UniProt:O64872 | ProteinID:OAP09671.1 | PFAM:PF03107 | PO:PO:0000084 |
| PO:PO:0000293 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007123 | PO:PO:0009005 | PO:PO:0009025 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR13871 | PANTHER:PTHR13871:SF60 |
| SUPFAM:SSF57889 | UniParc:UPI00000A0775 | SEG:seg | : | : | : |
Description
At2g44380 [Source:UniProtKB/TrEMBL;Acc:O64872]
Coordinates
chr2:-:18323366..18324561
Molecular Weight (calculated)
28273.9 Da
IEP (calculated)
6.002
GRAVY (calculated)
-0.771
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRKPVNRP SVRHASHNHP LRVFKARDED EVVCSGCELE LTGQAFKCMK SDCDYFLHKS CFDLPRETNH KSHPNHSLTL LHSPPYGQSY TCDACGEYGS
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
101: GFTYNCSECQ YDVHVGCAFI PETVEREDHE HPLTLLYNTP CKGREDGAKF ICDVCEEKMS ENLWVYYCKE CDYGTHVHSC AVYEDHESEK RGGGREEGEA
201: SSAVSRMKSL MKAQDEMAAL QLEARIRNDT NNAILDLWDS PKRRYYY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.